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BaseInfo

ncRNA ID novel_zma_miR1825
Species Zea mays
Class miRNA
Genome position Chr6:92503717-92503805 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 21
Mature sequence(if miRNA) 69 - CAUGAUACGAAUUGAUGGCCA - 89
Stem-loop(if miRNA) --                                         U
  CAUGAUACGAAUUGAUGGCCAUCUUCUUUAUAUGAAUAUAU U
  ||||||||||||||||||||||||||||||||||||||||| C
  GUACUAUGCUUAACUACCGGUAGAAGAAAUAUACUUAUAUA U
UC                                         U
Stem-loop sequence CAUGAUACGAAUUGAUGGCCAUCUUCUUUAUAUGAAUAUAUUUCUUAUAUAUUCAUAUAAAGAAGAUGGCCAUCAAUUCGUAUCAUGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT054317.1
ncRNA:21   ACCGGUAGUUAAGCAUAGUAC   1
  *||*||||||||||*||||||
targets:1749   GGGGCAUCAAUUCGGAUCAUG   1769

2.5 Zea mays full-length cDNA clone ZM_BFb0287K13 mRNA, complete cds NA coding protein psRNATarget
NM_001152481.1
ncRNA:21   ACCGGUAGUUAAGCAUAGUAC   1
  *||*||||||||||*||||||
targets:1749   GGGGCAUCAAUUCGGAUCAUG   1769

2.5 Zea mays Tetratricopeptide repeat (TPR)-like superfamily protein (LOC100279479), mRNA NA coding protein psRNATarget
XM_008653090.2
ncRNA:21   ACCGGUAGUUAAGCAUAGUAC   1
  *||*||||||||||*||||||
targets:1766   GGGGCAUCAAUUCGGAUCAUG   1786

2.5 PREDICTED: Zea mays Tetratricopeptide repeat (TPR)-like superfamily protein (LOC100279479), transcript variant X1, mRNA NA coding protein psRNATarget
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