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BaseInfo

ncRNA ID	novel_zma_miR1822
Species	Zea mays
Class	miRNA
Genome position	Chr6:94405592-94405662 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089713;SRR2287163;SRR1997866;SRR2089700;SRR2089705
Length	24
Mature sequence(if miRNA)	1 - GGAUUGAUACGGAUUGAGAGGGAU - 24
Stem-loop(if miRNA)	--         GG  UGU      A          A   UCUUUUUAG  CU   UCGGUU UUUUCAAUCC U   |||||||||  ||   |||||| ||||||||||   GGGAGAGUU  GG   AGUUAG GGAGGUUAGG A UA         -A  CAU      G          U
Stem-loop sequence	UCUUUUUAGGGCUUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUACGGAUUGAGAGGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539810.1	ncRNA:24   UAGGGAGAGUUAGGCAUAGUUAGG   1   ||||||=||||||||||||||||| targets:682   AUCCCUUUCAAUCCGUAUCAAUCC   705 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   UAGGGAGAGUUAGGCAUAGUUAGG   1   |||||||*|||||||||||||||| targets:1963   AUCCCUCCCAAUCCGUAUCAAUCC   1986 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   UAGGGAGAGUUAGGCAUAGUUAGG   1   |||||||*|||||||||||||||| targets:1963   AUCCCUCCCAAUCCGUAUCAAUCC   1986 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   UAGGGAGAGUUAGGCAUAGUUAGG   1   |||=||||||||||*||||||||| targets:428   AUCUCUCUCAAUCCAUAUCAAUCC   451 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   UAGGGAGAGUUAGGCAUAGUUAGG   1   |||=|||*|||||||||||||||| targets:5   AUCUCUCCCAAUCCGUAUCAAUCC   28 Target Full Sequence	1.0	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   UAGGGAGAGUUAGGCAUAGUUAGG   1   ||||||=*|||||||||||||||| targets:959   AUCCCUUCCAAUCCGUAUCAAUCC   982 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   UAGGGAGAGUUAGGCAUAGUUAGG   1   ||||=||*|||||||||||=|||| targets:1681   AUCCUUCACAAUCCGUAUCGAUCC   1704 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   UAGGGAGAGUUAGGCAUAGUUAGG   1   ||||||=*|||||||||||||||= targets:3103   AUCCCUUCCAAUCCGUAUCAAUCU   3126 Target Full Sequence	3.0	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
EU965203.1	ncRNA:24   UAGGGAGAGUUAGGCAUAGUUAGG   1   |||=|*|||||||||||||||||* targets:871   AUCUCCCUCAAUCCGUAUCAAUCA   894 Target Full Sequence	2.0	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:24   UAGGGAGAGUUAGGCAUAGUUAGG   1   |||=|*|||||||||||||||||* targets:871   AUCUCCCUCAAUCCGUAUCAAUCA   894 Target Full Sequence	2.0	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   UAGGGAGAG-UUAGGCAUAGUUAGG   1   ||||-||||-||||||||||||||| targets:1613   AUCC-UCUCUAAUCCGUAUCAAUCC   1636 Target Full Sequence	2.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   UAGGGAGAGUUAGGCAUAGUUAGG   1   |||=|*|*|||||||||||||||= targets:991   AUCUCCCCCAAUCCGUAUCAAUCU   1014 Target Full Sequence	3.0	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget