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BaseInfo

ncRNA ID	osa-miR5831
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:28577824-28577979 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	123 - UAGUCAAACUUAGAAUAGUUGGAC - 146
Stem-loop(if miRNA)	U     C   U  A     C         A            -      -            A   AAAUUU   U    U  UUGGU AAA UU AACUA UCUAAGUUU ACUAAUUUUAUA AAAAGA UAGUAAUAUUUU AAU      UCA AAUA A  ||||| ||| || ||||| ||||||||| |||||||||||| |||||| |||||||||||| |||      ||| ||||  AAUCA UUU AG UUGAU AGAUUCAAA UGAUUAAAAUAU UUUUUU AUCAUUAUAAAA UUG      GGU UUAU U A     A   C  G     A         C            C      C            A   ------   U    U
Stem-loop sequence	UUUGGUCAAAUUUAAACUACUCUAAGUUUAACUAAUUUUAUAAAAAGAUAGUAAUAUUUUAAAUAAAUUUUCAUAAUAUAUUUAUUUUGGGUUAAAAAUAUUACUACUUUUUUCUAUAAAAUUAGUCAAACUUAGAAUAGUUGGACUUUAACUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779641.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   |||*|||||||=|||||||||||| targets:2011   GUCAAACUAUUUUAAGUUUGACUA   2034 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group tyrosine N-monooxygenase (LOC4335062), mRNA	tyrosine N-monooxygenase(LOC4335062)	coding protein	psRNATarget
XM_015793379.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   |||*|||||||||||||||||=|| targets:1807   GUCAAACUAUUCUAAGUUUGAUUA   1830 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B2-like (LOC107281855), mRNA	UDP-glycosyltransferase 89B2-like(LOC107281855)	coding protein	psRNATarget
XM_015755259.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   |||*||||=||=|||||||||||| targets:816   GUCAAACUGUUUUAAGUUUGACUA   839 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346670 (LOC4346670), transcript variant X3, mRNA	uncharacterized LOC4346670(LOC4346670)	coding protein	psRNATarget
CT835905.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   ||=*||=||||=|||||||||||| targets:410   GUUAAAUUAUUUUAAGUUUGACUA   433 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN064J21, full insert sequence	NA	coding protein	psRNATarget
XM_015773578.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   |||*|||||*|||||||||||||| targets:301   GUCAAACUACUCUAAGUUUGACUA   324 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative F-box protein At2g02030 (LOC9271925), transcript variant X3, mRNA	putative F-box protein At2g02030(LOC9271925)	coding protein	psRNATarget
AK106941.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   |||*|||||*|=|||||||||||| targets:1022   GUCAAACUAGUUUAAGUUUGACUA   1045 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-119-D05, full insert sequence	NA	coding protein	psRNATarget
XM_015769365.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   |||*|||||*|=|||||||||||| targets:1022   GUCAAACUAGUUUAAGUUUGACUA   1045 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329064 (LOC4329064), mRNA	uncharacterized LOC4329064(LOC4329064)	coding protein	psRNATarget
HI404428.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   *||*|||||*|||||||||||=|| targets:32   UUCAAACUACUCUAAGUUUGAUUA   55 Target Full Sequence	2.5	Sequence 2553 from Patent EP2074227	NA	coding protein	psRNATarget
JB164889.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   *||*|||||*|||||||||||=|| targets:32   UUCAAACUACUCUAAGUUUGAUUA   55 Target Full Sequence	2.5	Sequence 2553 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236558.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   *||*|||||*|||||||||||=|| targets:32   UUCAAACUACUCUAAGUUUGAUUA   55 Target Full Sequence	2.5	Sequence 2553 from Patent EP2985353	NA	coding protein	psRNATarget
CT835003.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   *||*|||||*|||||||||||=|| targets:200   CUCAAACUACUCUAAGUUUGAUUA   223 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054K08, full insert sequence	NA	coding protein	psRNATarget
AK288214.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   |||*||||**|||||||||||||| targets:855   GUCAAACUUAUCUAAGUUUGACUA   878 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090010G11, full insert sequence	NA	coding protein	psRNATarget
AK288527.1	ncRNA:24   CAGGUUGAUAAGAUUCAAACUGAU   1   |||*|||||*|||*|||||||||| targets:606   GUCAAACUACUCUUAGUUUGACUA   629 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).