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BaseInfo

ncRNA ID novel_zma_miR1817
Species Zea mays
Class miRNA
Genome position Chr6:122175210-122175304 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 1 - CCGGACUGUCCGGUGGUGCAUCGA - 24
Stem-loop(if miRNA) --        AGGC     GACGGUGAACCGGUUGCUCUCGGGAAAACG
  GGUGCGCC    UGGUC                              A
  ||||||||    |||||                              C
  CUACGUGG    UGGCC                              A
AG        ----     UGUCAGGCCACUUAAAAUCAGUAUGCGGAG
Stem-loop sequence GGUGCGCCAGGCUGGUCGACGGUGAACCGGUUGCUCUCGGGAAAACGACAGAGGCGUAUGACUAAAAUUCACCGGACUGUCCGGUGGUGCAUCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ242313.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGG   52

0.0 Sequence 8308 from Patent EP2985353 NA coding protein psRNATarget
JB170644.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGG   52

0.0 Sequence 8308 from Patent EP2559767 NA coding protein psRNATarget
JB169399.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGG   52

0.0 Sequence 7063 from Patent EP2559767 NA coding protein psRNATarget
LQ241168.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGG   52

0.0 Sequence 7163 from Patent EP2985353 NA coding protein psRNATarget
HI409038.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGG   52

0.0 Sequence 7163 from Patent EP2074227 NA coding protein psRNATarget
LQ241068.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGG   52

0.0 Sequence 7063 from Patent EP2985353 NA coding protein psRNATarget
HI408938.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGG   52

0.0 Sequence 7063 from Patent EP2074227 NA coding protein psRNATarget
HI410183.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGG   52

0.0 Sequence 8308 from Patent EP2074227 NA coding protein psRNATarget
JB169499.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGG   52

0.0 Sequence 7163 from Patent EP2559767 NA coding protein psRNATarget
HI409440.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGG   52

0.0 Sequence 7565 from Patent EP2074227 NA coding protein psRNATarget
JB169901.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGG   52

0.0 Sequence 7565 from Patent EP2559767 NA coding protein psRNATarget
LQ241570.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGG   52

0.0 Sequence 7565 from Patent EP2985353 NA coding protein psRNATarget
BT068112.2
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:723   CCGGUGCACCACCGGACAGUCCGG   746

0.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT038885.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||||||=||||||||||||||||
targets:1026   CCGAUGCGCCACCGGACAGUCCGG   1049

1.0 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
BT066461.2
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:849   CCGGUGCACCACCGGACAGUCCGG   872

0.0 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
BT066461.2
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=|||||||||*||||||||||
targets:724   CCGGUGCACCACCAGACAGUCCGG   747

1.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||||||=||||||||||||||||
targets:1397   CCGAUGCGCCACCGGACAGUCCGG   1420

1.0 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:799   CCGGUGCACCACCGGACAGUCCGG   822

0.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
BT066811.2
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:799   CCGGUGCACCACCGGACAGUCCGG   822

0.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:662   CCGGUGCACCACCGGACAGUCCGG   685

0.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
BT061124.2
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:662   CCGGUGCACCACCGGACAGUCCGG   685

0.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
HI409909.1
ncRNA:24   AG-CUACGUGGUGGCCUGUCAGGCC   1
  ||-|=||||||||||||||||||||
targets:30   UCUGGUGCACCACCGGACAGUCCGG   54

0.0 Sequence 8034 from Patent EP2074227 NA coding protein psRNATarget
JB170370.1
ncRNA:24   AG-CUACGUGGUGGCCUGUCAGGCC   1
  ||-|=||||||||||||||||||||
targets:30   UCUGGUGCACCACCGGACAGUCCGG   54

0.0 Sequence 8034 from Patent EP2559767 NA coding protein psRNATarget
LQ242039.1
ncRNA:24   AG-CUACGUGGUGGCCUGUCAGGCC   1
  ||-|=||||||||||||||||||||
targets:30   UCUGGUGCACCACCGGACAGUCCGG   54

0.0 Sequence 8034 from Patent EP2985353 NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||||||||||||||||||||
targets:4710   CCGGUGCACCACCGGACAGUCCGG   4733

0.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
EU940831.1
ncRNA:24   AG-CUACGUGGUGGCCUGUCAGGCC   1
  ||-|=||||||||||||||||||||
targets:531   UCUGGUGCACCACCGGACAGUCCGG   555

0.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940831.1
ncRNA:24   AGCU-ACGUGGUGGCCUGUCAGGCC   1
  |||=-||*|*|||||||||||||||
targets:176   UCGGGUGGAGCACCGGACAGUCCGG   200

2.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
NM_001176621.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=|||||||||||||||||=||
targets:706   CCGGUGCACCACCGGACAGUCUGG   729

1.5 Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA NA coding protein psRNATarget
BT068871.2
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=|||||||||||||||||=||
targets:706   CCGGUGCACCACCGGACAGUCUGG   729

1.5 Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds NA coding protein psRNATarget
NM_001349964.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=|||=||||||||||||||||
targets:2991   CCGGUGCGCCACCGGACAGUCCGG   3014

1.0 Zea mays uncharacterized LOC100278112 (IDP592), mRNA NA coding protein psRNATarget
BT065921.2
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=|||||||||||||||||||*
targets:815   CCGGUGCACCACCGGACAGUCCGA   838

1.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=|||||||||||||||||||*
targets:815   CCGGUGCACCACCGGACAGUCCGA   838

1.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT069074.2
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=|||*=|||||||||||||||
targets:679   CCGGUGCUUCACCGGACAGUCCGG   702

2.0 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
BT016820.1
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=|||||||||||||*||||||
targets:182   CCGGUGCACCACCGGACUGUCCGG   205

1.5 Zea mays clone Contig653 mRNA sequence NA coding protein psRNATarget
BT086229.2
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=||*|||||||||||||||||
targets:646   CCGGUGAACCACCGGACAGUCCGG   669

1.0 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
EU947420.1
ncRNA:24   AG-CUACGUGGUGGCCUGUCAGGCC   1
  ||-|=|||||||||||||*||||||
targets:575   UCUGGUGCACCACCGGACUGUCCGG   599

1.5 Zea mays clone 342805 mRNA sequence NA coding protein psRNATarget
BT061123.2
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  *||=|||*=|||||||||||||||
targets:352   CCGGUGCCUCACCGGACAGUCCGG   375

2.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
EU940845.1
ncRNA:24   AG-CUACGUGGUGGCCUGUCAGGCC   1
  ||-|=|||*=|||||||||||||||
targets:1467   UCUGGUGCCUCACCGGACAGUCCGG   1491

2.0 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
HI409932.1
ncRNA:24   AG-CUACGUGGUGGCCUGUCAGGCC   1
  ||-|=||**||||||||||||||||
targets:27   UCUGGUGGCCCACCGGACAGUCCGG   51

2.0 Sequence 8057 from Patent EP2074227 NA coding protein psRNATarget
LQ242062.1
ncRNA:24   AG-CUACGUGGUGGCCUGUCAGGCC   1
  ||-|=||**||||||||||||||||
targets:27   UCUGGUGGCCCACCGGACAGUCCGG   51

2.0 Sequence 8057 from Patent EP2985353 NA coding protein psRNATarget
JB170393.1
ncRNA:24   AG-CUACGUGGUGGCCUGUCAGGCC   1
  ||-|=||**||||||||||||||||
targets:27   UCUGGUGGCCCACCGGACAGUCCGG   51

2.0 Sequence 8057 from Patent EP2559767 NA coding protein psRNATarget
XM_008664950.2
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  |*|=-||||||||||||||||=||
targets:258   UAGG-GCACCACCGGACAGUCUGG   280

1.5 PREDICTED: Zea mays potassium transporter 1-like (HAK19), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008664949.2
ncRNA:24   AGCUACGUGGUGGCCUGUCAGGCC   1
  |*|=-||||||||||||||||=||
targets:257   UAGG-GCACCACCGGACAGUCUGG   279

1.5 PREDICTED: Zea mays potassium transporter 1-like (HAK19), transcript variant X1, mRNA NA coding protein psRNATarget
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