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BaseInfo

ncRNA ID	novel_zma_miR1814
Species	Zea mays
Class	miRNA
Genome position	Chr3:137306320-137306471 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647221;SRR2647385;SRR2647389;SRR2647391
Length	24
Mature sequence(if miRNA)	1 - AUAACCGAACAAGCCCUUAGGGUU - 24
Stem-loop(if miRNA)	-C                 U  UGG     AUCC      ------------A             A CC  UUUAAAUCCAU   UCCUAAGGGCUUGUUCG UU   UGAUA    ACAUGU             UUGGGUGGGAUUG G  GG           A   ||||||||||||||||| ||   |||||    ||||||             ||||||||||||| |  ||   GGGAUUCCCGAACAAGC AA   ACUAU    UGUACA             AACCCACCCUAAC C  CC           A UU                 C  -UA     --AA      CAUAACCUCACAG             C UA  UAAAACUGAAC
Stem-loop sequence	CUCCUAAGGGCUUGUUCGUUUUGGUGAUAAUCCACAUGUAUUGGGUGGGAUUGAGCCGGUUUAAAUCCAUAACAAGUCAAAAUCCAUCCCAAUCCCACCCAAGACACUCCAAUACACAUGUAAUAUCAAUAACCGAACAAGCCCUUAGGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001176594.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ||=|=||||||||||||||||||| targets:1033   AAUCUUAAGGGCUUGUUCGGUUAU   1056 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ||=|=||||||||||||||||||| targets:1033   AAUCUUAAGGGCUUGUUCGGUUAU   1056 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ||=|=||||||||||||||||||| targets:1524   AAUCUUAAGGGCUUGUUCGGUUAU   1547 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661229.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   *||=|||||||=|||||||||||| targets:2643   CACUCUAAGGGUUUGUUCGGUUAU   2666 Target Full Sequence	1.5	PREDICTED: Zea mays kanadaptin (LOC103638266), mRNA	NA	coding protein	psRNATarget
EU942557.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   **|=|||||||||||||||||||| targets:472   CUCUCUAAGGGCUUGUUCGGUUAU   495 Target Full Sequence	0.0	Zea mays clone 1517970 mRNA sequence	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   UUGGGA--UUCCCGAACAAGCCAAUA   1   *|||||--|||||||||||||||||| targets:749   UACCCUCCAAGGGCUUGUUCGGUUAU   774 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   **||=||||||||||||||||||| targets:1934   CUCCUUAAGGGCUUGUUCGGUUAU   1957 Target Full Sequence	0.0	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   *||*|||||||||||||||||||| targets:151   CACACUAAGGGCUUGUUCGGUUAU   174 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAUA   1   |=||--=||||||||||||||||||| targets:88   AGCCGUUUAAGGGCUUGUUCGGUUAU   113 Target Full Sequence	0.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget
JB163553.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   ||=||-||||||||||||||||||* targets:2   AAUCCGUAAGGGCUUGUUCGGUUAG   26 Target Full Sequence	3.0	Sequence 1217 from Patent EP2559767	NA	coding protein	psRNATarget
HI403092.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   ||=||-||||||||||||||||||* targets:2   AAUCCGUAAGGGCUUGUUCGGUUAG   26 Target Full Sequence	3.0	Sequence 1217 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235222.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   ||=||-||||||||||||||||||* targets:2   AAUCCGUAAGGGCUUGUUCGGUUAG   26 Target Full Sequence	3.0	Sequence 1217 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237952.1	ncRNA:24   UUG----GGAUUCCCGAACAAGCCAAUA   1   |||----||||||||||||||||||||* targets:130   AACAAGGCCUAAGGGCUUGUUCGGUUAG   157 Target Full Sequence	1.0	Sequence 3947 from Patent EP2985353	NA	coding protein	psRNATarget
JB166283.1	ncRNA:24   UUG----GGAUUCCCGAACAAGCCAAUA   1   |||----||||||||||||||||||||* targets:130   AACAAGGCCUAAGGGCUUGUUCGGUUAG   157 Target Full Sequence	1.0	Sequence 3947 from Patent EP2559767	NA	coding protein	psRNATarget
HI405822.1	ncRNA:24   UUG----GGAUUCCCGAACAAGCCAAUA   1   |||----||||||||||||||||||||* targets:130   AACAAGGCCUAAGGGCUUGUUCGGUUAG   157 Target Full Sequence	1.0	Sequence 3947 from Patent EP2074227	NA	coding protein	psRNATarget
EU944907.1	ncRNA:24   UUG-GGAUUCCCGAACAAGCCAAUA   1   ||=-||||||||||||||||||||* targets:242   AAUUCCUAAGGGCUUGUUCGGUUAG   266 Target Full Sequence	1.0	Zea mays clone 235115 mRNA sequence	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   |=||=|*||||||||||||||||| targets:1871   AGCCUUUAGGGCUUGUUCGGUUAU   1894 Target Full Sequence	1.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   ||||-||*||||||||||||||||| targets:649   AACCACUUAGGGCUUGUUCGGUUAU   673 Target Full Sequence	1.0	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   UUGGG--AUUCCCGAACAAGCCAAUA   1   *|=||--||||||||||||||||||| targets:430   CAUCCAGUAAGGGCUUGUUCGGUUAU   455 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
EU963392.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   **||=|=||||||||||||||||| targets:1601   CUCCUUGAGGGCUUGUUCGGUUAU   1624 Target Full Sequence	1.0	Zea mays clone 261790 cytochrome P450 CYP71K14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175832.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   **||=|=||||||||||||||||| targets:1601   CUCCUUGAGGGCUUGUUCGGUUAU   1624 Target Full Sequence	1.0	Zea mays putative cytochrome P450 superfamily protein (LOC100383167), mRNA	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   *=||||*||||||||||||||||| targets:5   CGCCCUUAGGGCUUGUUCGGUUAU   28 Target Full Sequence	1.0	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget
LQ235117.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   *|||-|||||||||||||||||||* targets:2   UACCACUAAGGGCUUGUUCGGUUAG   26 Target Full Sequence	1.0	Sequence 1112 from Patent EP2985353	NA	coding protein	psRNATarget
HI402987.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   *|||-|||||||||||||||||||* targets:2   UACCACUAAGGGCUUGUUCGGUUAG   26 Target Full Sequence	1.0	Sequence 1112 from Patent EP2074227	NA	coding protein	psRNATarget
JB163448.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   *|||-|||||||||||||||||||* targets:2   UACCACUAAGGGCUUGUUCGGUUAG   26 Target Full Sequence	1.0	Sequence 1112 from Patent EP2559767	NA	coding protein	psRNATarget
EU948930.1	ncRNA:24   UUGGGA--UUCCCGAACAAGCCAAUA   1   |==|=|--|||||||||||||||||| targets:308   AGUCUUGUAAGGGCUUGUUCGGUUAU   333 Target Full Sequence	2.5	Zea mays clone 390579 mRNA sequence	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   *|=|||||||*||||||||||||| targets:1435   UAUCCUAAGGCCUUGUUCGGUUAU   1458 Target Full Sequence	1.0	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   *|=|||||||*||||||||||||| targets:1435   UAUCCUAAGGCCUUGUUCGGUUAU   1458 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008677073.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   *||=||||||*||||||||||||| targets:1800   CACUCUAAGGUCUUGUUCGGUUAU   1823 Target Full Sequence	1.0	PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   *|=|||||||*||||||||||||| targets:2405   UAUCCUAAGGCCUUGUUCGGUUAU   2428 Target Full Sequence	1.0	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   *|||=|*||||||||||||||||| targets:2705   CACCUUUAGGGCUUGUUCGGUUAU   2728 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   *|||=|*||||||||||||||||| targets:2809   CACCUUUAGGGCUUGUUCGGUUAU   2832 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546135.1	ncRNA:24   UUGGGA--UUCCCGAACAAGCCAAUA   1   |==|=|--|||||||||||||||||| targets:3020   AGUCUUGUAAGGGCUUGUUCGGUUAU   3045 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546136.1	ncRNA:24   UUGGGA--UUCCCGAACAAGCCAAUA   1   |==|=|--|||||||||||||||||| targets:3167   AGUCUUGUAAGGGCUUGUUCGGUUAU   3192 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU942632.1	ncRNA:24   UUG-GGAUUCCCGAACAAGCCAAUA   1   |||-==||||||||||||||||||* targets:159   AACAUUUAAGGGCUUGUUCGGUUAG   183 Target Full Sequence	1.0	Zea mays clone 1525411 mRNA sequence	NA	coding protein	psRNATarget
BT017852.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   |=||-=||||||||||||||||||* targets:840   AGCCAUUAAGGGCUUGUUCGGUUAG   864 Target Full Sequence	1.0	Zea mays clone EL01N0511C01.c mRNA sequence	NA	coding protein	psRNATarget
EU960828.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   |=||-=||||||||||||||||||* targets:897   AGCCAUUAAGGGCUUGUUCGGUUAG   921 Target Full Sequence	1.0	Zea mays clone 228913 exosome complex exonuclease RRP41 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538633.1	ncRNA:24   UUGGG---AUUCCCGAACAAGCCAAUA   1   ===||---||||||||||||||||||| targets:3856   GGUCCAUAUAAGGGCUUGUUCGGUUAU   3882 Target Full Sequence	3.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008647808.2	ncRNA:24   UUGGG---AUUCCCGAACAAGCCAAUA   1   ===||---||||||||||||||||||| targets:3969   GGUCCAUAUAAGGGCUUGUUCGGUUAU   3995 Target Full Sequence	3.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538630.1	ncRNA:24   UUGGG---AUUCCCGAACAAGCCAAUA   1   ===||---||||||||||||||||||| targets:4008   GGUCCAUAUAAGGGCUUGUUCGGUUAU   4034 Target Full Sequence	3.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538631.1	ncRNA:24   UUGGG---AUUCCCGAACAAGCCAAUA   1   ===||---||||||||||||||||||| targets:4756   GGUCCAUAUAAGGGCUUGUUCGGUUAU   4782 Target Full Sequence	3.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020538632.1	ncRNA:24   UUGGG---AUUCCCGAACAAGCCAAUA   1   ===||---||||||||||||||||||| targets:4757   GGUCCAUAUAAGGGCUUGUUCGGUUAU   4783 Target Full Sequence	3.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001350089.1	ncRNA:24   UUGGG---AUUCCCGAACAAGCCAAUA   1   ===||---||||||||||||||||||| targets:5819   GGUCCAUAUAAGGGCUUGUUCGGUUAU   5845 Target Full Sequence	3.0	Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), mRNA	NA	coding protein	psRNATarget
EU942657.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   ||=|-||||||*||||||||||||| targets:142   AAUCACUAAGGCCUUGUUCGGUUAU   166 Target Full Sequence	1.0	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
EU949831.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   ||=|-||||||*||||||||||||| targets:920   AAUCACUAAGGCCUUGUUCGGUUAU   944 Target Full Sequence	1.0	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   ||=|-||||||*||||||||||||| targets:3387   AAUCACUAAGGCCUUGUUCGGUUAU   3411 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   ||=|-||||||*||||||||||||| targets:3373   AAUCACUAAGGCCUUGUUCGGUUAU   3397 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   ||=|-||||||*||||||||||||| targets:3655   AAUCACUAAGGCCUUGUUCGGUUAU   3679 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   ||=|-||||||*||||||||||||| targets:3660   AAUCACUAAGGCCUUGUUCGGUUAU   3684 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB163727.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   |=|=||||||*||||||||||||* targets:40   AGCUCUAAGGACUUGUUCGGUUAG   63 Target Full Sequence	2.0	Sequence 1391 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235396.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   |=|=||||||*||||||||||||* targets:40   AGCUCUAAGGACUUGUUCGGUUAG   63 Target Full Sequence	2.0	Sequence 1391 from Patent EP2985353	NA	coding protein	psRNATarget
HI403266.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   |=|=||||||*||||||||||||* targets:40   AGCUCUAAGGACUUGUUCGGUUAG   63 Target Full Sequence	2.0	Sequence 1391 from Patent EP2074227	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAUA   1   |=||--||*||||||||||||||||| targets:22   AGCCAUCUCAGGGCUUGUUCGGUUAU   47 Target Full Sequence	1.0	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAUA   1   |||=--||=|||||||||||||||*| targets:773   AACUAGCUGAGGGCUUGUUCGGUUYU   798 Target Full Sequence	2.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
BT062563.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   |||==|*||||||||||||||||* targets:1193   AACUUUUAGGGCUUGUUCGGUUAG   1216 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174684.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   |||==|*||||||||||||||||* targets:1193   AACUUUUAGGGCUUGUUCGGUUAG   1216 Target Full Sequence	2.0	Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA	NA	coding protein	psRNATarget
XM_008645434.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   |||==|*||||||||||||||||* targets:2436   AACUUUUAGGGCUUGUUCGGUUAG   2459 Target Full Sequence	2.0	PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAUA   1   ||||--=||||*|||||||||||||| targets:1132   AACCACUUAAGAGCUUGUUCGGUUAU   1157 Target Full Sequence	1.0	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ095217.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   ||||-||*||||||||||||||||* targets:27   AACCACUUAGGGCUUGUUCGGUUAC   51 Target Full Sequence	2.0	TSA: Zea mays contig30870, mRNA sequence	NA	coding protein	psRNATarget
EU946280.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   |||*-|||||||||||||||||||* targets:591   AACAACUAAGGGCUUGUUCGGUUAG   615 Target Full Sequence	1.0	Zea mays clone 303329 mRNA sequence	NA	coding protein	psRNATarget
BT040160.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ||=**||||||||||||||||||| targets:944   AAUGGUAAGGGCUUGUUCGGUUAU   967 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0068H20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153881.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   |||=*|||||*||||||||||||| targets:972   AACUGUAAGGCCUUGUUCGGUUAU   995 Target Full Sequence	1.0	Zea mays Tumor protein (LOC100280961), mRNA	NA	coding protein	psRNATarget
EU954940.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   |||=*|||||*||||||||||||| targets:972   AACUGUAAGGCCUUGUUCGGUUAU   995 Target Full Sequence	1.0	Zea mays clone 1494218 tumor-related protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   *||*|-||||||||||||||||||| targets:1331   UACGCGUAAGGGCUUGUUCGGUUAU   1355 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   *||*|-||||||||||||||||||| targets:1375   UACGCGUAAGGGCUUGUUCGGUUAU   1399 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   *||*|-||||||||||||||||||| targets:1393   UACGCGUAAGGGCUUGUUCGGUUAU   1417 Target Full Sequence	2.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   *||*|-||||||||||||||||||| targets:1407   UACGCGUAAGGGCUUGUUCGGUUAU   1431 Target Full Sequence	2.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   *||*|-||||||||||||||||||| targets:1407   UACGCGUAAGGGCUUGUUCGGUUAU   1431 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   UUG---GGAUUCCCGAACAAGCCAAUA   1   |=|---|||||||||||||||||||*| targets:1888   AGCUUACCUAAGGGCUUGUUCGGUUCU   1914 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   UUG---GGAUUCCCGAACAAGCCAAUA   1   |=|---|||||||||||||||||||*| targets:1888   AGCUUACCUAAGGGCUUGUUCGGUUCU   1914 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_020541453.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   |||*-|||||||||||||||||||* targets:1935   AACAACUAAGGGCUUGUUCGGUUAG   1959 Target Full Sequence	1.0	PREDICTED: Zea mays DNA-(apurinic or apyrimidinic site) lyase 2 (LOC103633096), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008654777.2	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   |||*-|||||||||||||||||||* targets:2304   AACAACUAAGGGCUUGUUCGGUUAG   2328 Target Full Sequence	1.0	PREDICTED: Zea mays DNA-(apurinic or apyrimidinic site) lyase 2 (LOC103633096), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008654776.2	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   |||*-|||||||||||||||||||* targets:2502   AACAACUAAGGGCUUGUUCGGUUAG   2526 Target Full Sequence	1.0	PREDICTED: Zea mays DNA-(apurinic or apyrimidinic site) lyase 2 (LOC103633096), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654775.2	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   |||*-|||||||||||||||||||* targets:2504   AACAACUAAGGGCUUGUUCGGUUAG   2528 Target Full Sequence	1.0	PREDICTED: Zea mays DNA-(apurinic or apyrimidinic site) lyase 2 (LOC103633096), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008648200.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ***==||||||||||||||||||| targets:4237   UCAUUUAAGGGCUUGUUCGGUUAU   4260 Target Full Sequence	0.0	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008648199.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ***==||||||||||||||||||| targets:4242   UCAUUUAAGGGCUUGUUCGGUUAU   4265 Target Full Sequence	0.0	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008648198.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ***==||||||||||||||||||| targets:4334   UCAUUUAAGGGCUUGUUCGGUUAU   4357 Target Full Sequence	0.0	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008648197.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ***==||||||||||||||||||| targets:4338   UCAUUUAAGGGCUUGUUCGGUUAU   4361 Target Full Sequence	0.0	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY106606.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   **===|||||||||||||||||=| targets:416   CUUUUUAAGGGCUUGUUCGGUUGU   439 Target Full Sequence	1.5	Zea mays PCO135617 mRNA sequence	NA	coding protein	psRNATarget
XM_020553062.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   ||=|=-|*||||||||||||||||| targets:800   AAUCUAUUAGGGCUUGUUCGGUUAU   824 Target Full Sequence	3.0	PREDICTED: Zea mays CASP-like protein 12 (LOC100193285), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001138428.2	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   ||=|=-|*||||||||||||||||| targets:851   AAUCUAUUAGGGCUUGUUCGGUUAU   875 Target Full Sequence	3.0	Zea mays CASP-like protein 12 (LOC100193285), mRNA	NA	coding protein	psRNATarget
BT085493.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   **===|||||||||||||||||=| targets:696   CUUUUUAAGGGCUUGUUCGGUUGU   719 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0020K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT036499.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   ||=|=-|*||||||||||||||||| targets:945   AAUCUAUUAGGGCUUGUUCGGUUAU   969 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0119B07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   UUGGG---AUUCCCGAACAAGCCAAUA   1   **=||---||||||||||||||||||| targets:776   CUUCCAUGUAAGGGCUUGUUCGGUUAU   802 Target Full Sequence	3.0	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU974225.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   ||=|=-|*||||||||||||||||| targets:1080   AAUCUAUUAGGGCUUGUUCGGUUAU   1104 Target Full Sequence	3.0	Zea mays clone 443257 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   |||*=-|=||||||||||||||||| targets:1028   AACAUAUGAGGGCUUGUUCGGUUAU   1052 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   |||*=-|=||||||||||||||||| targets:1028   AACAUAUGAGGGCUUGUUCGGUUAU   1052 Target Full Sequence	3.0	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT035508.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   ||=|=-|*||||||||||||||||| targets:1270   AAUCUAUUAGGGCUUGUUCGGUUAU   1294 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0066P20 mRNA, complete cds	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   UUGGG-AUUCCCGAACAAGCCAAUA   1   |||*=-|=||||||||||||||||| targets:1319   AACAUAUGAGGGCUUGUUCGGUUAU   1343 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   ||||-=|=|||||||||||||||*| targets:1530   AACCAUUGAGGGCUUGUUCGGUUCU   1554 Target Full Sequence	2.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_008651215.2	ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAUA   1   =|||--=|=||||||||||||||||* targets:357   GACCACUUGAGGGCUUGUUCGGUUAG   382 Target Full Sequence	2.0	PREDICTED: Zea mays putative domain of unknown function (DUF641) containing family protein (LOC103630129), mRNA	NA	coding protein	psRNATarget
XM_008654752.2	ncRNA:24   UUG----GGAUUCCCGAACAAGCCAAUA   1   |||----=||||||||*||||||||||| targets:2531   AACAAGGUCUAAGGGCCUGUUCGGUUAU   2558 Target Full Sequence	1.5	PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 35 (LOC103633070), mRNA	NA	coding protein	psRNATarget
XM_008674024.2	ncRNA:24   UUGGGAU---UCCCGAACAAGCCAAUA   1   =*|=|||---||||||||||||||||| targets:3789   GUCUCUACUUAGGGCUUGUUCGGUUAU   3815 Target Full Sequence	3.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674023.2	ncRNA:24   UUGGGAU---UCCCGAACAAGCCAAUA   1   =*|=|||---||||||||||||||||| targets:3803   GUCUCUACUUAGGGCUUGUUCGGUUAU   3829 Target Full Sequence	3.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674025.2	ncRNA:24   UUGGGAU---UCCCGAACAAGCCAAUA   1   =*|=|||---||||||||||||||||| targets:3921   GUCUCUACUUAGGGCUUGUUCGGUUAU   3947 Target Full Sequence	3.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008674021.2	ncRNA:24   UUGGGAU---UCCCGAACAAGCCAAUA   1   =*|=|||---||||||||||||||||| targets:3936   GUCUCUACUUAGGGCUUGUUCGGUUAU   3962 Target Full Sequence	3.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU946745.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ||=*=||||||=|||||||||||* targets:453   AAUAUUAAGGGUUUGUUCGGUUAG   476 Target Full Sequence	2.5	Zea mays clone 323251 mRNA sequence	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAUA   1   |||=--||=|||||||||||||||*| targets:825   AACUAGCUGAGGGCUUGUUCGGUUCU   850 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAUA   1   |||=--||=|||||||||||||||*| targets:771   AACUAGCUGAGGGCUUGUUCGGUUCU   796 Target Full Sequence	2.5	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAUA   1   |||=--||=|||||||||||||||*| targets:771   AACUAGCUGAGGGCUUGUUCGGUUCU   796 Target Full Sequence	2.5	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAUA   1   |||=--||=|||||||||||||||*| targets:772   AACUAGCUGAGGGCUUGUUCGGUUCU   797 Target Full Sequence	2.5	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAUA   1   |||=--||=|||||||||||||||*| targets:844   AACUAGCUGAGGGCUUGUUCGGUUCU   869 Target Full Sequence	2.5	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
XM_008669845.2	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   *|||-=|=||||||||||||||||* targets:1699   UACCAUUGAGGGCUUGUUCGGUUAG   1723 Target Full Sequence	2.0	PREDICTED: Zea mays BcpLH protein (cl15365_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAUA   1   **||-||==|||||||||||||||| targets:1598   UCCCACUGGGGGCUUGUUCGGUUAU   1622 Target Full Sequence	2.0	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008656925.2	ncRNA:24   UUG-GGAUUCCCGAACAAGCCAAUA   1   ||=-|||*||||||||||||||||* targets:11   AAUUCCUUAGGGCUUGUUCGGUUAC   35 Target Full Sequence	2.0	PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100304325), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001176906.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ***|||*||||||||||||||||| targets:164   CCACCUCAGGGCUUGUUCGGUUAU   187 Target Full Sequence	1.0	Zea mays uncharacterized LOC100384359 (LOC100384359), mRNA	NA	coding protein	psRNATarget
BT069908.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ***|||*||||||||||||||||| targets:164   CCACCUCAGGGCUUGUUCGGUUAU   187 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0320O20 mRNA, complete cds	NA	coding protein	psRNATarget
BT069231.2	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   **||||*||||||||||||||||* targets:964   CUCCCUUAGGGCUUGUUCGGUUAC   987 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   |||==|||||*|||||||*||||| targets:5709   AACUUUAAGGCCUUGUUCAGUUAU   5732 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
HI407138.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   *|=*=||||||||||||||||||* targets:6   CAUAUUAAGGGCUUGUUCGGUUAG   29 Target Full Sequence	1.0	Sequence 5263 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239268.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   *|=*=||||||||||||||||||* targets:6   CAUAUUAAGGGCUUGUUCGGUUAG   29 Target Full Sequence	1.0	Sequence 5263 from Patent EP2985353	NA	coding protein	psRNATarget
JB167599.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   *|=*=||||||||||||||||||* targets:6   CAUAUUAAGGGCUUGUUCGGUUAG   29 Target Full Sequence	1.0	Sequence 5263 from Patent EP2559767	NA	coding protein	psRNATarget
BT040386.1	ncRNA:24   UUG-GGAUUCCCGAACAAGCCAAUA   1   =|=-|||*|||||||||||||||=| targets:813   GAUGCCUUAGGGCUUGUUCGGUUGU   837 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0088H06 mRNA, complete cds	NA	coding protein	psRNATarget
BT018572.1	ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAUA   1   |=||--||*||||||||||||||||* targets:1739   AGCCAUCUUAGGGCUUGUUCGGUUAG   1764 Target Full Sequence	2.0	Zea mays clone EL01N0443D02.d mRNA sequence	NA	coding protein	psRNATarget
EU968099.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ||*=*||||||||||||||||||* targets:127   AAAUAUAAGGGCUUGUUCGGUUAG   150 Target Full Sequence	1.0	Zea mays clone 314232 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT068791.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ***==||||||||||||||||||* targets:1247   CCAUUUAAGGGCUUGUUCGGUUAG   1270 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0382D13 mRNA, complete cds	NA	coding protein	psRNATarget
EU948922.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ||||*|*|||*||||||||||||| targets:2   AACCAUUAGGCCUUGUUCGGUUAU   25 Target Full Sequence	2.0	Zea mays clone 390151 mRNA sequence	NA	coding protein	psRNATarget
BT017593.1	ncRNA:24   UU---GGGAUUCCCGAACAAGCCAAUA   1   ||---||||*||||||||||||*|||| targets:367   AAUCCCCCUUAGGGCUUGUUCGUUUAU   393 Target Full Sequence	2.5	Zea mays clone EL01N0430H01.c mRNA sequence	NA	coding protein	psRNATarget
BT041767.1	ncRNA:24   UUGGGAUUCCCGAACAAGCCAAUA   1   ||||*|*|||*||||||||||||| targets:502   AACCAUUAGGCCUUGUUCGGUUAU   525 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0049O10 mRNA, complete cds	NA	coding protein	psRNATarget