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BaseInfo

ncRNA ID	novel_zma_miR1809
Species	Zea mays
Class	miRNA
Genome position	Chr6:150597786-150597835 [-]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	27 - UUUGCCGAGUGCUUUUUAUCGGAC - 50
Stem-loop(if miRNA)	--        G        -A    A   UUUGCCGA UGCUUUUU  UCGG C   |||||||| ||||||||  ||||   AAACGGCU AUGAAGAA  AGUU A AG        -        AC    C
Stem-loop sequence	UUUGCCGAGUGCUUUUUAUCGGACACUUGACAAAGAAGUAUCGGCAAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166323.1	ncRNA:24   CA--GGCUAUUUUUCGUGAGCCGUUU   1   ||--||||*||||=|||||||||||| targets:208   GUAACCGACAAAAGGCACUCGGCAAA   233 Target Full Sequence	2.5	Sequence 3987 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237992.1	ncRNA:24   CA--GGCUAUUUUUCGUGAGCCGUUU   1   ||--||||*||||=|||||||||||| targets:208   GUAACCGACAAAAGGCACUCGGCAAA   233 Target Full Sequence	2.5	Sequence 3987 from Patent EP2985353	NA	coding protein	psRNATarget
HI405862.1	ncRNA:24   CA--GGCUAUUUUUCGUGAGCCGUUU   1   ||--||||*||||=|||||||||||| targets:208   GUAACCGACAAAAGGCACUCGGCAAA   233 Target Full Sequence	2.5	Sequence 3987 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CAGGCUAUUUUUCGUGAGCCGUUU   1   ||=*||*|||||*||||||||||| targets:1961   GUUGGAGAAAAAACACUCGGCAAA   1984 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CAGGCUAUUUUUCGUGAGCCGUUU   1   ||=*||*|||||*||||||||||| targets:1961   GUUGGAGAAAAAACACUCGGCAAA   1984 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671736.2	ncRNA:24   CA--GGCUAUUUUUCGUGAGCCGUUU   1   ||--||||*|||||*||||||||||| targets:264   GUGCCCGACAAAAAACACUCGGCAAA   289 Target Full Sequence	2.5	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL28 (LOC103647166), mRNA	NA	coding protein	psRNATarget
EU952231.1	ncRNA:24   CAGGCUAUUUUUCGUGAGCCGUUU   1   ||*|||*|||||*||||||||||| targets:1730   GUACGACAAAAAACACUCGGCAAA   1753 Target Full Sequence	2.5	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget
XM_008645204.2	ncRNA:24   CAGGCUAUUUUUCGUGAGCCGUUU   1   *|=|*|*|||||*||||||||||| targets:4365   UUUCAAAAAAAAACACUCGGCAAA   4388 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553261.1	ncRNA:24   CAGGCUAUUUUUCGUGAGCCGUUU   1   *|=|*|*|||||*||||||||||| targets:4372   UUUCAAAAAAAAACACUCGGCAAA   4395 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008645203.2	ncRNA:24   CAGGCUAUUUUUCGUGAGCCGUUU   1   *|=|*|*|||||*||||||||||| targets:4433   UUUCAAAAAAAAACACUCGGCAAA   4456 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X1, mRNA	NA	coding protein	psRNATarget