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BaseInfo

ncRNA ID novel_zma_miR1808
Species Zea mays
Class miRNA
Genome position Chr6:151540691-151540765 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712;SRR2089715;SRR2089708
Length 24
Mature sequence(if miRNA) 52 - AUAUGGAUUGAGUGGGAUUGGGUG - 75
Stem-loop(if miRNA) --AU                    -----   ---     A
    AUGGAUUGAGUGGGAUUGGG     UGA   GUUUA A
    ||||||||||||||||||||     |||   ||||| U
    UACCUAAUUUACCUUAAUUU     ACU   CAAAU C
UGUC                    UUUUG   GAA     C
Stem-loop sequence AUAUGGAUUGAGUGGGAUUGGGUGAGUUUAAAUCCUAAACAAGUCAGUUUUUUUAAUUCCAUUUAAUCCAUCUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT043378.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|||||||||||||||||||||
targets:1466   CAUCCAAUCCCACUCAAUCCAUAU   1489

0.0 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
NM_001148918.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|||||||||||||||||||||
targets:1466   CAUCCAAUCCCACUCAAUCCAUAU   1489

0.0 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
EZ064093.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||||||||||||||||||||||=|
targets:188   CACCCAAUCCCACUCAAUCCAUGU   211

1.5 TSA: Zea mays contig65216, mRNA sequence NA coding protein psRNATarget
LQ235135.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|||||||||||||||||||||
targets:98   CAUCCAAUCCCACUCAAUCCAUAU   121

0.0 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
HI403005.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|||||||||||||||||||||
targets:98   CAUCCAAUCCCACUCAAUCCAUAU   121

0.0 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
JB163466.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|||||||||||||||||||||
targets:98   CAUCCAAUCCCACUCAAUCCAUAU   121

0.0 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
HI409007.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||||||||||||||||||||||=|
targets:73   CACCCAAUCCCACUCAAUCCAUGU   96

1.5 Sequence 7132 from Patent EP2074227 NA coding protein psRNATarget
JB169468.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||||||||||||||||||||||=|
targets:73   CACCCAAUCCCACUCAAUCCAUGU   96

1.5 Sequence 7132 from Patent EP2559767 NA coding protein psRNATarget
LQ241137.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||||||||||||||||||||||=|
targets:73   CACCCAAUCCCACUCAAUCCAUGU   96

1.5 Sequence 7132 from Patent EP2985353 NA coding protein psRNATarget
XM_008669549.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|=|||||||||||||||||||
targets:2082   CAUCUAAUCCCACUCAAUCCAUAU   2105

0.0 PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA NA coding protein psRNATarget
BT042044.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|=|||||||||||||||||||
targets:1365   CAUCUAAUCCCACUCAAUCCAUAU   1388

0.0 Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds NA coding protein psRNATarget
BT069961.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|||||||||||||||=|||||
targets:110   CAUCCAAUCCCACUCAAUUCAUAU   133

1.5 Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds NA coding protein psRNATarget
XM_020542014.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  =|||||||=|||||||=|||||||
targets:180   UACCCAAUUCCACUCAGUCCAUAU   203

2.5 PREDICTED: Zea mays uncharacterized LOC100277104 (LOC100277104), transcript variant X1, mRNA NA coding protein psRNATarget
EZ052459.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||=||||=|||||||||||||
targets:24   CAUCCGAUCCUACUCAAUCCAUAU   47

2.0 TSA: Zea mays contig53580, mRNA sequence NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:5804   CAUCCAAUCCCACUCAAUCCACAU   5827

1.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:1229   CAUCCAAUCCCACUCAAUCCACAU   1252

1.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:1199   CAUCCAAUCCCACUCAAUCCACAU   1222

1.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:1199   CAUCCAAUCCCACUCAAUCCACAU   1222

1.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:1081   CAUCCAAUCCCACUCAAUCCACAU   1104

1.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008672266.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|=||||=||=|||||||||||
targets:1196   CAUCUAAUCUCAUUCAAUCCAUAU   1219

2.5 PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008672265.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|=||||=||=|||||||||||
targets:944   CAUCUAAUCUCAUUCAAUCCAUAU   967

2.5 PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:1958   CAUCCAAUCCCACUCAAUCCACAU   1981

1.5 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:1958   CAUCCAAUCCCACUCAAUCCACAU   1981

1.5 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:2500   CAUCCAAUCCCACUCAAUCCACAU   2523

1.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:2211   CAUCCAAUCCCACUCAAUCCACAU   2234

1.5 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
EU955707.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  |||=|||||||*||||||||||||
targets:603   CACUCAAUCCCCCUCAAUCCAUAU   626

1.5 Zea mays clone 1543022 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU955633.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:1815   CAUCCAAUCCCACUCAAUCCACAU   1838

1.5 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:1815   CAUCCAAUCCCACUCAAUCCACAU   1838

1.5 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:1530   CAUCCAAUCCCACUCAAUCCACAU   1553

1.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:1530   CAUCCAAUCCCACUCAAUCCACAU   1553

1.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:528   CAUCCAAUCCCACUCAAUCCACAU   551

1.5 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
BT085319.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:176   CAUCCAAUCCCACUCAAUCCACAU   199

1.5 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:874   CAUCCAAUCCCACUCAAUCCACAU   897

1.5 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
EU951448.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:745   CAUCCAAUCCCACUCAAUCCACAU   768

1.5 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
EZ064016.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:120   CAUCCAAUCCCACUCAAUCCACAU   143

1.5 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
LQ235224.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:98   CAUCCAAUCCCACUCAAUCCACAU   121

1.5 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
HI403094.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:98   CAUCCAAUCCCACUCAAUCCACAU   121

1.5 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
JB163555.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:98   CAUCCAAUCCCACUCAAUCCACAU   121

1.5 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
HI405841.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:89   CAUCCAAUCCCACUCAAUCCACAU   112

1.5 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:89   CAUCCAAUCCCACUCAAUCCACAU   112

1.5 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
JB166302.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:89   CAUCCAAUCCCACUCAAUCCACAU   112

1.5 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
JB166363.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:80   CAUCCAAUCCCACUCAAUCCACAU   103

1.5 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
HI405902.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:80   CAUCCAAUCCCACUCAAUCCACAU   103

1.5 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:80   CAUCCAAUCCCACUCAAUCCACAU   103

1.5 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
JB166350.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:79   CAUCCAAUCCCACUCAAUCCACAU   102

1.5 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:79   CAUCCAAUCCCACUCAAUCCACAU   102

1.5 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI405889.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||||||||||||||*||
targets:79   CAUCCAAUCCCACUCAAUCCACAU   102

1.5 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
XM_008666492.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|||||||=||||||||||*||
targets:3753   CAUCCAAUCCUACUCAAUCCACAU   3776

2.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008666491.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|||||||=||||||||||*||
targets:3748   CAUCCAAUCCUACUCAAUCCACAU   3771

2.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546709.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|||||||=||||||||||*||
targets:3466   CAUCCAAUCCUACUCAAUCCACAU   3489

2.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008666493.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|||||||=||||||||||*||
targets:3480   CAUCCAAUCCUACUCAAUCCACAU   3503

2.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:2348   CAUCCAAUCUCACUCAAUCCACAU   2371

2.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:2288   CAUCCAAUCUCACUCAAUCCACAU   2311

2.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:2281   CAUCCAAUCUCACUCAAUCCACAU   2304

2.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:2153   CAUCCAAUCUCACUCAAUCCACAU   2176

2.5 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:2152   CAUCCAAUCUCACUCAAUCCACAU   2175

2.5 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
BT063416.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:2080   CAUCCAAUCUCACUCAAUCCACAU   2103

2.5 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
BT066987.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||==|||||||||||||||||*||
targets:1415   CAUUCAAUCCCACUCAAUCCACAU   1438

1.5 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
NM_001174368.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  |||=|||||=|||||||||||*||
targets:1443   CACUCAAUCUCACUCAAUCCACAU   1466

2.5 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
BT061560.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  |||=|||||=|||||||||||*||
targets:1443   CACUCAAUCUCACUCAAUCCACAU   1466

2.5 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
EU949831.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|||||||=||||||||||*||
targets:1013   CAUCCAAUCCUACUCAAUCCACAU   1036

2.5 Zea mays clone 447574 mRNA sequence NA coding protein psRNATarget
BT041052.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||==|||||||||||||||||*||
targets:1124   CAUUCAAUCCCACUCAAUCCACAU   1147

1.5 Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds NA coding protein psRNATarget
NM_001147844.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||==|||||||||||||||||*||
targets:1124   CAUUCAAUCCCACUCAAUCCACAU   1147

1.5 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
BT062183.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:246   CAUCCAAUCUCACUCAAUCCACAU   269

2.5 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
BT086633.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:455   CAUCCAAUCUCACUCAAUCCACAU   478

2.5 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
EU942657.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|||||||=||||||||||*||
targets:235   CAUCCAAUCCUACUCAAUCCACAU   258

2.5 Zea mays clone 1527578 mRNA sequence NA coding protein psRNATarget
EU942673.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||==|||||||||||||||||*||
targets:91   CAUUCAAUCCCACUCAAUCCACAU   114

1.5 Zea mays clone 1529344 mRNA sequence NA coding protein psRNATarget
LQ235150.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||==|||||||||||||||||*||
targets:98   CAUUCAAUCCCACUCAAUCCACAU   121

1.5 Sequence 1145 from Patent EP2985353 NA coding protein psRNATarget
HI403020.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||==|||||||||||||||||*||
targets:98   CAUUCAAUCCCACUCAAUCCACAU   121

1.5 Sequence 1145 from Patent EP2074227 NA coding protein psRNATarget
JB163481.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||==|||||||||||||||||*||
targets:98   CAUUCAAUCCCACUCAAUCCACAU   121

1.5 Sequence 1145 from Patent EP2559767 NA coding protein psRNATarget
JB166338.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:87   CAUCCAAUCUCACUCAAUCCACAU   110

2.5 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
LQ238007.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:87   CAUCCAAUCUCACUCAAUCCACAU   110

2.5 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
HI405877.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:87   CAUCCAAUCUCACUCAAUCCACAU   110

2.5 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
LQ238023.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:79   CAUCCAAUCUCACUCAAUCCACAU   102

2.5 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
JB166354.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:79   CAUCCAAUCUCACUCAAUCCACAU   102

2.5 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
HI405893.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:79   CAUCCAAUCUCACUCAAUCCACAU   102

2.5 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
EZ092645.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=||||||=|||||||||||*||
targets:16   CAUCCAAUCUCACUCAAUCCACAU   39

2.5 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
LQ241947.1
ncRNA:24   GUGG-GUUAGGGUGAGUUAGGUAUA   1
  ||||-|||||||*||||||||||||
targets:76   CACCUCAAUCCCCCUCAAUCCAUAU   100

1.5 Sequence 7942 from Patent EP2985353 NA coding protein psRNATarget
HI409817.1
ncRNA:24   GUGG-GUUAGGGUGAGUUAGGUAUA   1
  ||||-|||||||*||||||||||||
targets:76   CACCUCAAUCCCCCUCAAUCCAUAU   100

1.5 Sequence 7942 from Patent EP2074227 NA coding protein psRNATarget
JB170278.1
ncRNA:24   GUGG-GUUAGGGUGAGUUAGGUAUA   1
  ||||-|||||||*||||||||||||
targets:76   CACCUCAAUCCCCCUCAAUCCAUAU   100

1.5 Sequence 7942 from Patent EP2559767 NA coding protein psRNATarget
XM_008675817.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  *||=|||||||||||||||||*||
targets:4057   GACUCAAUCCCACUCAAUCCACAU   4080

1.5 PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA NA coding protein psRNATarget
JB163551.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  *|=||||||||||||||||||*||
targets:98   AAUCCAAUCCCACUCAAUCCACAU   121

1.5 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
LQ235220.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  *|=||||||||||||||||||*||
targets:98   AAUCCAAUCCCACUCAAUCCACAU   121

1.5 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
HI403090.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  *|=||||||||||||||||||*||
targets:98   AAUCCAAUCCCACUCAAUCCACAU   121

1.5 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|=||||=|||||||||||*||
targets:3438   CAUCUAAUCUCACUCAAUCCACAU   3461

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|=||||=|||||||||||*||
targets:3407   CAUCUAAUCUCACUCAAUCCACAU   3430

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  ||=|=||||=|||||||||||*||
targets:3394   CAUCUAAUCUCACUCAAUCCACAU   3417

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
HI405878.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  =|=||||||=|||||||||||*||
targets:91   UAUCCAAUCUCACUCAAUCCACAU   114

2.5 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
JB166339.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  =|=||||||=|||||||||||*||
targets:91   UAUCCAAUCUCACUCAAUCCACAU   114

2.5 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
LQ238008.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  =|=||||||=|||||||||||*||
targets:91   UAUCCAAUCUCACUCAAUCCACAU   114

2.5 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  |*|=|||||||*||||||||||||
targets:1966   CCCUCAAUCCCCCUCAAUCCAUAU   1989

1.5 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
EU962730.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  |*|=|||||||*||||||||||||
targets:1070   CCCUCAAUCCCUCUCAAUCCAUAU   1093

1.5 Zea mays clone 245054 mRNA sequence NA coding protein psRNATarget
BT018999.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  |*||=||||||*||||||||||||
targets:461   CCCCUAAUCCCUCUCAAUCCAUAU   484

1.5 Zea mays clone Contig487.F mRNA sequence NA coding protein psRNATarget
BT034589.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  *|=|=||*||=|||||||||||||
targets:791   GAUCUAAACCUACUCAAUCCAUAU   814

2.0 Zea mays full-length cDNA clone ZM_BFb0002A19 mRNA, complete cds NA coding protein psRNATarget
EU960921.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  =|===|||||=||||||||||*||
targets:1250   UAUUUAAUCCUACUCAAUCCACAU   1273

2.5 Zea mays clone 229589 histone deacetylase 11 mRNA, complete cds NA coding protein psRNATarget
NM_001279564.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  =|===|||||=||||||||||*||
targets:1247   UAUUUAAUCCUACUCAAUCCACAU   1270

2.5 Zea mays uncharacterized LOC100277470 (LOC100277470), mRNA NA coding protein psRNATarget
BT061531.2
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  |*==|||||||*||||||||||||
targets:846   CCUUCAAUCCCCCUCAAUCCAUAU   869

1.5 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
EU968756.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  =|===|||||=||||||||||*||
targets:926   UAUUUAAUCCUACUCAAUCCACAU   949

2.5 Zea mays clone 323940 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU972313.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  |*|=|=|||||*||||||||||||
targets:27   CCCUCGAUCCCCCUCAAUCCAUAU   50

2.5 Zea mays clone 379548 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
HI408824.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  |*|=||||||=*||||||||||||
targets:78   CCCUCAAUCCUCCUCAAUCCAUAU   101

2.5 Sequence 6949 from Patent EP2074227 NA coding protein psRNATarget
JB169285.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  |*|=||||||=*||||||||||||
targets:78   CCCUCAAUCCUCCUCAAUCCAUAU   101

2.5 Sequence 6949 from Patent EP2559767 NA coding protein psRNATarget
LQ240954.1
ncRNA:24   GUGGGUUAGGGUGAGUUAGGUAUA   1
  |*|=||||||=*||||||||||||
targets:78   CCCUCAAUCCUCCUCAAUCCAUAU   101

2.5 Sequence 6949 from Patent EP2985353 NA coding protein psRNATarget
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