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BaseInfo

ncRNA ID novel_zma_miR1807
Species Zea mays
Class miRNA
Genome position Chr6:160388353-160388448 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712;SRR2089713;SRR2287163;SRR2287165;SRR2089706
Length 24
Mature sequence(if miRNA) 1 - AAAUGUCAUAACACCGUUGGAUAC - 24
Stem-loop(if miRNA) --                 UC    UUUUU    AAC   A  -AA    A
  AUCUAACGGUGUUGUGG  UUUU     AAUG   AGC CC   CAUG A
  |||||||||||||||||  ||||     ||||   ||| ||   |||| G
  UAGGUUGCCACAAUACU  AAAA     UUAU   UCG GG   GUGC A
CA                 GU    --UGU    ---   -  AGG    G
Stem-loop sequence AUCUAACGGUGUUGUGGUCUUUUUUUUUAAUGAACAGCACCAACAUGAAGAGCGUGGGAGGGCUUAUUUGUAAAAUGUCAUAACACCGUUGGAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008664717.2
ncRNA:24   CAUAGGUUGCCACAAUACUGUAAA   1
  |||||=||||||||||||||||||
targets:2597   GUAUCUAACGGUGUUAUGACAUUU   2620

1.0 PREDICTED: Zea mays tRNA (cytosine(34)-C(5))-methyltransferase (LOC103641349), transcript variant X5, mRNA NA coding protein psRNATarget