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BaseInfo

ncRNA ID	novel_zma_miR1803
Species	Zea mays
Class	miRNA
Genome position	Chr6:168951531-168951585 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2287164
Length	24
Mature sequence(if miRNA)	32 - AUAAACUUUGAUCAGCUGGAACGA - 55
Stem-loop(if miRNA)	-GA   G    CG    ---             UUC UAGC  GAUU   GUUUGUAUAA    ||| ||||  ||||   |||||||||U    AAG GUCG  CUAG   CAAAUAUAUU AGC   -    -A    UUU
Stem-loop sequence	GAUUCGUAGCCGGAUUGUUUGUAUAAUUUAUAUAAACUUUGAUCAGCUGGAACGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008652540.2	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||=|||||||||||||| targets:1393   UCGUUCCAGUUGAUCAAAGUUUAU   1416 Target Full Sequence	1.0	PREDICTED: Zea mays plasma membrane-bound peroxidase 2b (PER70), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238034.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:36   UCGUUCCAGCUAAUCAAAGUUUAU   59 Target Full Sequence	1.5	Sequence 4029 from Patent EP2985353	NA	coding protein	psRNATarget
HI405926.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:36   UCGUUCCAGCUAAUCAAAGUUUAU   59 Target Full Sequence	1.5	Sequence 4051 from Patent EP2074227	NA	coding protein	psRNATarget
JB166365.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:36   UCGUUCCAGCUAAUCAAAGUUUAU   59 Target Full Sequence	1.5	Sequence 4029 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238056.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:36   UCGUUCCAGCUAAUCAAAGUUUAU   59 Target Full Sequence	1.5	Sequence 4051 from Patent EP2985353	NA	coding protein	psRNATarget
JB166387.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:36   UCGUUCCAGCUAAUCAAAGUUUAU   59 Target Full Sequence	1.5	Sequence 4051 from Patent EP2559767	NA	coding protein	psRNATarget
HI405904.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:36   UCGUUCCAGCUAAUCAAAGUUUAU   59 Target Full Sequence	1.5	Sequence 4029 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238065.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:41   UCGUUCCAGCUAAUCAAAGUUUAU   64 Target Full Sequence	1.5	Sequence 4060 from Patent EP2985353	NA	coding protein	psRNATarget
HI405935.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:41   UCGUUCCAGCUAAUCAAAGUUUAU   64 Target Full Sequence	1.5	Sequence 4060 from Patent EP2074227	NA	coding protein	psRNATarget
JB166396.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:41   UCGUUCCAGCUAAUCAAAGUUUAU   64 Target Full Sequence	1.5	Sequence 4060 from Patent EP2559767	NA	coding protein	psRNATarget
EU941248.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:149   UCGUUCCAGCUAAUCAAAGUUUAU   172 Target Full Sequence	1.5	Zea mays clone 1431203 mRNA sequence	NA	coding protein	psRNATarget
AY103808.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:589   UCGUUCCAGCUAAUCAAAGUUUAU   612 Target Full Sequence	1.5	Zea mays PCO103670 mRNA sequence	NA	coding protein	psRNATarget
EU957814.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:1018   UCGUUCCAGCUAAUCAAAGUUUAU   1041 Target Full Sequence	1.5	Zea mays clone 1624339 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT035367.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:1279   UCGUUCCAGCUAAUCAAAGUUUAU   1302 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0057L05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138328.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:1279   UCGUUCCAGCUAAUCAAAGUUUAU   1302 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193173 (LOC100193173), mRNA	NA	coding protein	psRNATarget
EU972216.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:1297   UCGUUCCAGCUAAUCAAAGUUUAU   1320 Target Full Sequence	1.5	Zea mays clone 377576 mRNA sequence	NA	coding protein	psRNATarget
EU973341.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:1760   UCGUUCCAGCUAAUCAAAGUUUAU   1783 Target Full Sequence	1.5	Zea mays clone 397038 catalytic/ protein phosphatase type 2C mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158559.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:1760   UCGUUCCAGCUAAUCAAAGUUUAU   1783 Target Full Sequence	1.5	Zea mays uncharacterized LOC100285668 (IDP752), mRNA	NA	coding protein	psRNATarget
XM_008654752.2	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:2706   UCGUUCCAGCUAAUCAAAGUUUAU   2729 Target Full Sequence	1.5	PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 35 (LOC103633070), mRNA	NA	coding protein	psRNATarget
BT066445.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:887   UCGUUCCAGCUAAUCAAAGUUUAU   910 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0173D16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175834.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:887   UCGUUCCAGCUAAUCAAAGUUUAU   910 Target Full Sequence	1.5	Zea mays 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC100383169), mRNA	NA	coding protein	psRNATarget
XM_008650716.2	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:2617   UCGUUCCAGCUAAUCAAAGUUUAU   2640 Target Full Sequence	1.5	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539318.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:2620   UCGUUCCAGCUAAUCAAAGUUUAU   2643 Target Full Sequence	1.5	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540976.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||||*|||||||||||| targets:4447   UCGUUCCAGCUAAUCAAAGUUUAU   4470 Target Full Sequence	1.5	PREDICTED: Zea mays indole-3-acetaldehyde oxidase-like (LOC103631977), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ050562.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||=|||*|||||||||||| targets:82   UCGUUCCGGCUAAUCAAAGUUUAU   105 Target Full Sequence	2.5	TSA: Zea mays contig51682, mRNA sequence	NA	coding protein	psRNATarget
EZ060491.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |=|||||||||*|||||||||||| targets:159   UUGUUCCAGCUAAUCAAAGUUUAU   182 Target Full Sequence	1.5	TSA: Zea mays contig61613, mRNA sequence	NA	coding protein	psRNATarget
XM_008676824.2	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |||||||||=|*|||||||||||| targets:851   UCGUUCCAGUUAAUCAAAGUUUAU   874 Target Full Sequence	2.5	PREDICTED: Zea mays Nuclear protein (LOC103651203), mRNA	NA	coding protein	psRNATarget
EU952826.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*||||||||*|||||||||||| targets:682   UCAUUCCAGCUAAUCAAAGUUUAU   705 Target Full Sequence	1.5	Zea mays clone 1290653 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT084172.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*||||||||*|||||||||||| targets:547   UCAUUCCAGCUAAUCAAAGUUUAU   570 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0084P16 mRNA, complete cds	NA	coding protein	psRNATarget
AY103713.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*||||||||*|||||||||||| targets:562   UCAUUCCAGCUAAUCAAAGUUUAU   585 Target Full Sequence	1.5	Zea mays PCO076540 mRNA sequence	NA	coding protein	psRNATarget
XM_008668968.2	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*||||||||*|||||||||||| targets:621   UCAUUCCAGCUAAUCAAAGUUUAU   644 Target Full Sequence	1.5	PREDICTED: Zea mays Small nuclear ribonucleoprotein family protein (IDP147), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650936.2	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||||||*||||*|||||||||||| targets:1726   UCGUUCGAGCUAAUCAAAGUUUAU   1749 Target Full Sequence	2.5	PREDICTED: Zea mays berberine bridge enzyme-like 27 (LOC103629842), mRNA	NA	coding protein	psRNATarget
XM_008676360.2	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||||||||*||*|||||||||||| targets:1856   UCGUUCCAACUAAUCAAAGUUUAU   1879 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676377.2	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||||||||*||*|||||||||||| targets:1930   UCGUUCCAACUAAUCAAAGUUUAU   1953 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676366.2	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||||||||*||*|||||||||||| targets:1948   UCGUUCCAACUAAUCAAAGUUUAU   1971 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008676374.2	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||||||||*||*|||||||||||| targets:2024   UCGUUCCAACUAAUCAAAGUUUAU   2047 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU973171.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*||||=|||*|||||||||||| targets:689   UCAUUCCGGCUAAUCAAAGUUUAU   712 Target Full Sequence	2.5	Zea mays clone 394490 mRNA sequence	NA	coding protein	psRNATarget
NM_001153908.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*||||=|||*|||||||||||| targets:1121   UCAUUCCGGCUAAUCAAAGUUUAU   1144 Target Full Sequence	2.5	Zea mays plant-specific domain TIGR01627 family protein (LOC100280988), mRNA	NA	coding protein	psRNATarget
EU955083.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*||||=|||*|||||||||||| targets:1121   UCAUUCCGGCUAAUCAAAGUUUAU   1144 Target Full Sequence	2.5	Zea mays clone 1508988 plant-specific domain TIGR01627 family protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670105.2	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*||||=|||*|||||||||||| targets:1048   UCAUUCCGGCUAAUCAAAGUUUAU   1071 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382252 (LOC100382252), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001175005.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*||||=|||*|||||||||||| targets:1690   UCAUUCCGGCUAAUCAAAGUUUAU   1713 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA	NA	coding protein	psRNATarget
BT063644.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*||||=|||*|||||||||||| targets:1690   UCAUUCCGGCUAAUCAAAGUUUAU   1713 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538654.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*||||=|||*|||||||||||| targets:798   UCAUUCCGGCUAAUCAAAGUUUAU   821 Target Full Sequence	2.5	PREDICTED: Zea mays polyamine transporter PUT1 (LOC103643034), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY109256.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |*|||||||*|||||||||*|||| targets:337   UGGUUCCAGGUGAUCAAAGCUUAU   360 Target Full Sequence	2.5	Zea mays PCO124672 mRNA sequence	NA	coding protein	psRNATarget
BT035867.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*|||||*||*|||||||||||| targets:532   UCAUUCCAACUAAUCAAAGUUUAU   555 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0086I01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138677.1	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   ||*|||||*||*|||||||||||| targets:532   UCAUUCCAACUAAUCAAAGUUUAU   555 Target Full Sequence	2.5	Zea mays Small nuclear ribonucleoprotein family protein (IDP147), mRNA	NA	coding protein	psRNATarget
XM_008651541.2	ncRNA:24   AGCAAGGUCGACUAGUUUCAAAUA   1   |*|||||||*|||||||||*|||| targets:2964   UGGUUCCAGGUGAUCAAAGCUUAU   2987 Target Full Sequence	2.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase IRK (LOC103630489), mRNA	NA	coding protein	psRNATarget