Search result

BaseInfo

ncRNA ID novel_zma_miR1802
Species Zea mays
Class miRNA
Genome position Chr6:159006808-159006868 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712;SRR2089713
Length 24
Mature sequence(if miRNA) 1 - UUUUUUUAUUAGUCGCUGGAUAGU - 24
Stem-loop(if miRNA) ---                           A
   UUUUUUUAUUAGUCGCUGGAUAGUGCA A
   |||||||||||||||||||||||||||
   AGAAAAAUAAUCAGCGACCUAUCACGU A
CAA                           U
Stem-loop sequence UUUUUUUAUUAGUCGCUGGAUAGUGCAAAAUUGCACUAUCCAGCGACUAAUAAAAAGAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI405860.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||||
targets:52   ACUAUCCAGCGACUAAUAAAAAAA   75

0.0 Sequence 3985 from Patent EP2074227 NA coding protein psRNATarget
JB166321.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||||
targets:52   ACUAUCCAGCGACUAAUAAAAAAA   75

0.0 Sequence 3985 from Patent EP2559767 NA coding protein psRNATarget
LQ237990.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||||
targets:52   ACUAUCCAGCGACUAAUAAAAAAA   75

0.0 Sequence 3985 from Patent EP2985353 NA coding protein psRNATarget
HI405828.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||||
targets:47   ACUAUCCAGCGACUAAUAAAAAAA   70

0.0 Sequence 3953 from Patent EP2074227 NA coding protein psRNATarget
JB166289.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||||
targets:47   ACUAUCCAGCGACUAAUAAAAAAA   70

0.0 Sequence 3953 from Patent EP2559767 NA coding protein psRNATarget
LQ237958.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||||
targets:47   ACUAUCCAGCGACUAAUAAAAAAA   70

0.0 Sequence 3953 from Patent EP2985353 NA coding protein psRNATarget
XM_008664460.2
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:160   ACUAUCCAGCGACUAAUAAAAAGA   183

1.5 PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658752.2
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:2089   ACUAUCCAGCGACUAAUAAAAAGA   2112

1.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542418.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:2022   ACUAUCCAGCGACUAAUAAAAAGA   2045

1.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008675770.2
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:1855   ACUAUCCAGCGACUAAUAAAAAGA   1878

1.5 PREDICTED: Zea mays pectinesterase-like (LOC103650113), mRNA NA coding protein psRNATarget
XM_008656936.2
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:211   ACUAUCCAGCGACUAAUAAAAAGA   234

1.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669400.2
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:1647   ACUAUCCAGCGACUAAUAAAAAGA   1670

1.5 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008675381.2
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:1262   ACUAUCCAGCGACUAAUAAAAAGA   1285

1.5 PREDICTED: Zea mays probable WRKY transcription factor 48 (LOC103649650), mRNA NA coding protein psRNATarget
BT070166.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:811   ACUAUCCAGCGACUAAUAAAAAGA   834

1.5 Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds NA coding protein psRNATarget
NM_001328133.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:811   ACUAUCCAGCGACUAAUAAAAAGA   834

1.5 Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA NA coding protein psRNATarget
XM_008664463.2
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:140   ACUAUCCAGCGACUAAUAAAAAGA   163

1.5 PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X3, mRNA NA coding protein psRNATarget
LQ237954.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:47   ACUAUCCAGCGACUAAUAAAAAGA   70

1.5 Sequence 3949 from Patent EP2985353 NA coding protein psRNATarget
JB166285.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:47   ACUAUCCAGCGACUAAUAAAAAGA   70

1.5 Sequence 3949 from Patent EP2559767 NA coding protein psRNATarget
HI405824.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:47   ACUAUCCAGCGACUAAUAAAAAGA   70

1.5 Sequence 3949 from Patent EP2074227 NA coding protein psRNATarget
LQ237972.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:44   ACUAUCCAGCGACUAAUAAAAAGA   67

1.5 Sequence 3967 from Patent EP2985353 NA coding protein psRNATarget
HI405842.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:44   ACUAUCCAGCGACUAAUAAAAAGA   67

1.5 Sequence 3967 from Patent EP2074227 NA coding protein psRNATarget
JB166303.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:44   ACUAUCCAGCGACUAAUAAAAAGA   67

1.5 Sequence 3967 from Patent EP2559767 NA coding protein psRNATarget
HI403367.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:42   ACUAUCCAGCGACUAAUAAAAAGA   65

1.5 Sequence 1492 from Patent EP2074227 NA coding protein psRNATarget
JB163774.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:42   ACUAUCCAGCGACUAAUAAAAAGA   65

1.5 Sequence 1438 from Patent EP2559767 NA coding protein psRNATarget
HI403374.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:42   ACUAUCCAGCGACUAAUAAAAAGA   65

1.5 Sequence 1499 from Patent EP2074227 NA coding protein psRNATarget
JB163828.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:42   ACUAUCCAGCGACUAAUAAAAAGA   65

1.5 Sequence 1492 from Patent EP2559767 NA coding protein psRNATarget
LQ235443.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:42   ACUAUCCAGCGACUAAUAAAAAGA   65

1.5 Sequence 1438 from Patent EP2985353 NA coding protein psRNATarget
HI403313.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:42   ACUAUCCAGCGACUAAUAAAAAGA   65

1.5 Sequence 1438 from Patent EP2074227 NA coding protein psRNATarget
JB163835.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:42   ACUAUCCAGCGACUAAUAAAAAGA   65

1.5 Sequence 1499 from Patent EP2559767 NA coding protein psRNATarget
LQ235497.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:42   ACUAUCCAGCGACUAAUAAAAAGA   65

1.5 Sequence 1492 from Patent EP2985353 NA coding protein psRNATarget
LQ235504.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:42   ACUAUCCAGCGACUAAUAAAAAGA   65

1.5 Sequence 1499 from Patent EP2985353 NA coding protein psRNATarget
XM_020544902.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  |||||||||=||||||||||||=|
targets:3197   ACUAUCCAGUGACUAAUAAAAAGA   3220

2.5 PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544903.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  |||||||||=||||||||||||=|
targets:3188   ACUAUCCAGUGACUAAUAAAAAGA   3211

2.5 PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001143050.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  |||||||||=||||||||||||=|
targets:1131   ACUAUCCAGUGACUAAUAAAAAGA   1154

2.5 Zea mays uncharacterized LOC100216637 (LOC100216637), mRNA NA coding protein psRNATarget
BT037092.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  |||||||||=||||||||||||=|
targets:1131   ACUAUCCAGUGACUAAUAAAAAGA   1154

2.5 Zea mays full-length cDNA clone ZM_BFb0154F16 mRNA, complete cds NA coding protein psRNATarget
LQ237960.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||=|||||||||||||||=|
targets:47   ACUAUCUAGCGACUAAUAAAAAGA   70

2.5 Sequence 3955 from Patent EP2985353 NA coding protein psRNATarget
JB166291.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||=|||||||||||||||=|
targets:47   ACUAUCUAGCGACUAAUAAAAAGA   70

2.5 Sequence 3955 from Patent EP2559767 NA coding protein psRNATarget
HI405830.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||=|||||||||||||||=|
targets:47   ACUAUCUAGCGACUAAUAAAAAGA   70

2.5 Sequence 3955 from Patent EP2074227 NA coding protein psRNATarget
LQ235515.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||=|||||||||||||||=|
targets:42   ACUAUCUAGCGACUAAUAAAAAGA   65

2.5 Sequence 1510 from Patent EP2985353 NA coding protein psRNATarget
HI403385.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||=|||||||||||||||=|
targets:42   ACUAUCUAGCGACUAAUAAAAAGA   65

2.5 Sequence 1510 from Patent EP2074227 NA coding protein psRNATarget
JB163846.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||=|||||||||||||||=|
targets:42   ACUAUCUAGCGACUAAUAAAAAGA   65

2.5 Sequence 1510 from Patent EP2559767 NA coding protein psRNATarget
EU973473.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  |||||||*||||||||||||||=|
targets:696   ACUAUCCCGCGACUAAUAAAAAGA   719

2.5 Zea mays clone 399411 mRNA sequence NA coding protein psRNATarget
JB163755.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||=||||||*||||||||||
targets:58   ACUAUCUAGCGACAAAUAAAAAAA   81

2.5 Sequence 1419 from Patent EP2559767 NA coding protein psRNATarget
LQ235424.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||=||||||*||||||||||
targets:58   ACUAUCUAGCGACAAAUAAAAAAA   81

2.5 Sequence 1419 from Patent EP2985353 NA coding protein psRNATarget
HI403294.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||||=||||||*||||||||||
targets:58   ACUAUCUAGCGACAAAUAAAAAAA   81

2.5 Sequence 1419 from Patent EP2074227 NA coding protein psRNATarget
EU970288.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  |**|||||||||||||||||||=|
targets:1370   AAAAUCCAGCGACUAAUAAAAAGA   1393

1.5 Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds NA coding protein psRNATarget
LQ240753.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||*|||||*|||||||||||||=|
targets:56   ACCAUCCAUCGACUAAUAAAAAGA   79

2.5 Sequence 6748 from Patent EP2985353 NA coding protein psRNATarget
HI408623.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||*|||||*|||||||||||||=|
targets:56   ACCAUCCAUCGACUAAUAAAAAGA   79

2.5 Sequence 6748 from Patent EP2074227 NA coding protein psRNATarget
JB169084.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||*|||||*|||||||||||||=|
targets:56   ACCAUCCAUCGACUAAUAAAAAGA   79

2.5 Sequence 6748 from Patent EP2559767 NA coding protein psRNATarget
JB163834.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||*|||||*|||||||||||=|
targets:42   ACUACCCAGCUACUAAUAAAAAGA   65

2.5 Sequence 1498 from Patent EP2559767 NA coding protein psRNATarget
LQ235503.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||*|||||*|||||||||||=|
targets:42   ACUACCCAGCUACUAAUAAAAAGA   65

2.5 Sequence 1498 from Patent EP2985353 NA coding protein psRNATarget
HI403373.1
ncRNA:24   UGAUAGGUCGCUGAUUAUUUUUUU   1
  ||||*|||||*|||||||||||=|
targets:42   ACUACCCAGCUACUAAUAAAAAGA   65

2.5 Sequence 1498 from Patent EP2074227 NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.