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BaseInfo

ncRNA ID	novel_zma_miR1801
Species	Zea mays
Class	miRNA
Genome position	Chr6:154950544-154950621 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	55 - ACAACUAAAACGAAACGGAGUGAG - 78
Stem-loop(if miRNA)	--CC         U              A      U  A     CUCCGUUUC UUUUAGUUGUCGCU GAUAGU CA U     ||||||||| |||||||||||||| |||||| ||     GAGGCAAAG AAAAUCAACAGCGA CUAUCA GU U GAGU         C              C      C  U
Stem-loop sequence	CCCUCCGUUUCUUUUUAGUUGUCGCUAGAUAGUUCAAUUUUGCACUAUCCAGCGACAACUAAAACGAAACGGAGUGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241364.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:5   CUCCCUCCGUUUCGUUUUAGUUGU   28 Target Full Sequence	0.0	Sequence 7359 from Patent EP2985353	NA	coding protein	psRNATarget
JB169695.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:5   CUCCCUCCGUUUCGUUUUAGUUGU   28 Target Full Sequence	0.0	Sequence 7359 from Patent EP2559767	NA	coding protein	psRNATarget
HI409234.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:5   CUCCCUCCGUUUCGUUUUAGUUGU   28 Target Full Sequence	0.0	Sequence 7359 from Patent EP2074227	NA	coding protein	psRNATarget
JB167730.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5394 from Patent EP2559767	NA	coding protein	psRNATarget
HI407269.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5394 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239399.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5394 from Patent EP2985353	NA	coding protein	psRNATarget
HI407211.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5336 from Patent EP2074227	NA	coding protein	psRNATarget
HI407324.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5449 from Patent EP2074227	NA	coding protein	psRNATarget
JB167785.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5449 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239454.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5449 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239341.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5336 from Patent EP2985353	NA	coding protein	psRNATarget
JB167672.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5336 from Patent EP2559767	NA	coding protein	psRNATarget
HI407305.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5430 from Patent EP2074227	NA	coding protein	psRNATarget
HI407230.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5355 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239435.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5430 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239360.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5355 from Patent EP2985353	NA	coding protein	psRNATarget
JB167691.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5355 from Patent EP2559767	NA	coding protein	psRNATarget
JB167766.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:8   CUCCCUCCGUUUCGUUUUAGUUGU   31 Target Full Sequence	0.0	Sequence 5430 from Patent EP2559767	NA	coding protein	psRNATarget
EZ080914.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||||||||||||||||||*|||| targets:110   CUCACUCCGUUUCGUUUUAAUUGU   133 Target Full Sequence	1.5	TSA: Zea mays contig16553, mRNA sequence	NA	coding protein	psRNATarget
BT062468.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:573   CUCCCUCCGUUUCGUUUUAGUUGU   596 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0302A02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153043.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:837   CUCCCUCCGUUUCGUUUUAGUUGU   860 Target Full Sequence	0.0	Zea mays uncharacterized LOC100280105 (LOC100280105), mRNA	NA	coding protein	psRNATarget
BT055583.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:837   CUCCCUCCGUUUCGUUUUAGUUGU   860 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0049P16 mRNA, complete cds	NA	coding protein	psRNATarget
EU968044.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:1026   CUCCCUCCGUUUCGUUUUAGUUGU   1049 Target Full Sequence	0.0	Zea mays clone 313382 adenylyl-sulfate kinase 1 mRNA, complete cds	NA	coding protein	psRNATarget
BT035546.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:914   CUCCCUCCGUUUCGUUUUAGUUGU   937 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0068P01 mRNA, complete cds	NA	coding protein	psRNATarget
EU971616.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:1164   CUCCCUCCGUUUCGUUUUAGUUGU   1187 Target Full Sequence	0.0	Zea mays clone 368130 rieske domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549872.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:1267   CUCCCUCCGUUUCGUUUUAGUUGU   1290 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065656.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:1434   CUCCCUCCGUUUCGUUUUAGUUGU   1457 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175582.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:1434   CUCCCUCCGUUUCGUUUUAGUUGU   1457 Target Full Sequence	0.0	Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA	NA	coding protein	psRNATarget
NM_001156357.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:1517   CUCCCUCCGUUUCGUUUUAGUUGU   1540 Target Full Sequence	0.0	Zea mays Acetylornithine deacetylase (pco121857a), mRNA	NA	coding protein	psRNATarget
EU964807.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:1517   CUCCCUCCGUUUCGUUUUAGUUGU   1540 Target Full Sequence	0.0	Zea mays clone 281665 acetylornithine deacetylase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158152.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:2115   CUCUCUCCGUUUCGUUUUAGUUGU   2138 Target Full Sequence	0.0	Zea mays cyclin-like F-box (LOC100285258), mRNA	NA	coding protein	psRNATarget
EU971439.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||||||||||||| targets:2115   CUCUCUCCGUUUCGUUUUAGUUGU   2138 Target Full Sequence	0.0	Zea mays clone 364738 cyclin-like F-box mRNA, complete cds	NA	coding protein	psRNATarget
LQ242181.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*||=||||||||||||||||| targets:3   CUCCCUUCGUUUCGUUUUAGUUGU   26 Target Full Sequence	1.0	Sequence 8176 from Patent EP2985353	NA	coding protein	psRNATarget
HI410051.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*||=||||||||||||||||| targets:3   CUCCCUUCGUUUCGUUUUAGUUGU   26 Target Full Sequence	1.0	Sequence 8176 from Patent EP2074227	NA	coding protein	psRNATarget
JB170512.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*||=||||||||||||||||| targets:3   CUCCCUUCGUUUCGUUUUAGUUGU   26 Target Full Sequence	1.0	Sequence 8176 from Patent EP2559767	NA	coding protein	psRNATarget
EZ065373.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*=||||||||||||||||||| targets:280   CUCCUUCCGUUUCGUUUUAGUUGU   303 Target Full Sequence	0.0	TSA: Zea mays contig01006, mRNA sequence	NA	coding protein	psRNATarget
EU945792.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   ||=*|||||||||||||||||||| targets:1180   CUUCCUCCGUUUCGUUUUAGUUGU   1203 Target Full Sequence	0.0	Zea mays clone 285684 mRNA sequence	NA	coding protein	psRNATarget
EU964554.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   ||=*|||||||||||||||||||| targets:1329   CUUCCUCCGUUUCGUUUUAGUUGU   1352 Target Full Sequence	0.0	Zea mays clone 279840 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551485.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||=|||||||||||||||| targets:2530   CUCCCUCUGUUUCGUUUUAGUUGU   2553 Target Full Sequence	1.0	PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100279319), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667486.2	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   ||=*=||||||||||||||||||| targets:1335   CUUCUUCCGUUUCGUUUUAGUUGU   1358 Target Full Sequence	0.0	PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 3 (LOC103644285), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI407270.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:8   CUCCCUCCGUUUCUUUUUAGUUGU   31 Target Full Sequence	1.5	Sequence 5395 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239400.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:8   CUCCCUCCGUUUCUUUUUAGUUGU   31 Target Full Sequence	1.5	Sequence 5395 from Patent EP2985353	NA	coding protein	psRNATarget
JB167731.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:8   CUCCCUCCGUUUCUUUUUAGUUGU   31 Target Full Sequence	1.5	Sequence 5395 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235417.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:13   CUCCCUCCGUUUCUUUUUAGUUGU   36 Target Full Sequence	1.5	Sequence 1412 from Patent EP2985353	NA	coding protein	psRNATarget
HI403399.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:13   CUCCCUCCGUUUCUUUUUAGUUGU   36 Target Full Sequence	1.5	Sequence 1524 from Patent EP2074227	NA	coding protein	psRNATarget
JB163860.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:13   CUCCCUCCGUUUCUUUUUAGUUGU   36 Target Full Sequence	1.5	Sequence 1524 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235529.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:13   CUCCCUCCGUUUCUUUUUAGUUGU   36 Target Full Sequence	1.5	Sequence 1524 from Patent EP2985353	NA	coding protein	psRNATarget
HI403287.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:13   CUCCCUCCGUUUCUUUUUAGUUGU   36 Target Full Sequence	1.5	Sequence 1412 from Patent EP2074227	NA	coding protein	psRNATarget
JB163748.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:13   CUCCCUCCGUUUCUUUUUAGUUGU   36 Target Full Sequence	1.5	Sequence 1412 from Patent EP2559767	NA	coding protein	psRNATarget
EZ112557.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:50   CUCCCUCCGUUUCUUUUUAGUUGU   73 Target Full Sequence	1.5	TSA: Zea mays contig48218, mRNA sequence	NA	coding protein	psRNATarget
BT062074.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:1139   CUCCCUCCGUUUCUUUUUAGUUGU   1162 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0212O02 mRNA, complete cds	NA	coding protein	psRNATarget
EU953599.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:1227   CUCCCUCCGUUUCUUUUUAGUUGU   1250 Target Full Sequence	1.5	Zea mays clone 1437867 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682276.2	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:1222   CUCCCUCCGUUUCUUUUUAGUUGU   1245 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU973774.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:1237   CUCCCUCCGUUUCUUUUUAGUUGU   1260 Target Full Sequence	1.5	Zea mays clone 410704 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682289.2	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:1251   CUCCCUCCGUUUCUUUUUAGUUGU   1274 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X6, mRNA	NA	coding protein	psRNATarget
NM_001158647.2	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:1303   CUCCCUCCGUUUCUUUUUAGUUGU   1326 Target Full Sequence	1.5	Zea mays F-box domain containing protein (LOC100285757), mRNA	NA	coding protein	psRNATarget
EU973763.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:1305   CUCCCUCCGUUUCUUUUUAGUUGU   1328 Target Full Sequence	1.5	Zea mays clone 409560 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682282.2	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:1411   CUCCCUCCGUUUCUUUUUAGUUGU   1434 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674191.2	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:1153   CUCCCUCCGUUUCUUUUUAGUUGU   1176 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553332.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2000   CUCCCUCCGUUUCUUUUUAGUUGU   2023 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020553342.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2031   CUCCCUCCGUUUCUUUUUAGUUGU   2054 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008677351.2	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2059   CUCCCUCCGUUUCUUUUUAGUUGU   2082 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103651662), mRNA	NA	coding protein	psRNATarget
XM_020553327.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2113   CUCCCUCCGUUUCUUUUUAGUUGU   2136 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553339.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2144   CUCCCUCCGUUUCUUUUUAGUUGU   2167 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020537567.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:1454   CUCCCUCCGUUUCUUUUUAGUUGU   1477 Target Full Sequence	1.5	PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546695.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2207   CUCCCUCCGUUUCUUUUUAGUUGU   2230 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_008666445.2	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2207   CUCCCUCCGUUUCUUUUUAGUUGU   2230 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020546694.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2207   CUCCCUCCGUUUCUUUUUAGUUGU   2230 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020546685.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2228   CUCCCUCCGUUUCUUUUUAGUUGU   2251 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546687.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2228   CUCCCUCCGUUUCUUUUUAGUUGU   2251 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020546686.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2228   CUCCCUCCGUUUCUUUUUAGUUGU   2251 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546691.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2207   CUCCCUCCGUUUCUUUUUAGUUGU   2230 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020546689.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2166   CUCCCUCCGUUUCUUUUUAGUUGU   2189 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020546683.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2221   CUCCCUCCGUUUCUUUUUAGUUGU   2244 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546684.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2246   CUCCCUCCGUUUCUUUUUAGUUGU   2269 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546692.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2207   CUCCCUCCGUUUCUUUUUAGUUGU   2230 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020546693.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*|||||||||*|||||||||| targets:2145   CUCCCUCCGUUUCUUUUUAGUUGU   2168 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA	NA	coding protein	psRNATarget
EZ089411.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||**|||||||=||||||||||| targets:309   CUCCAUCCGUUUUGUUUUAGUUGU   332 Target Full Sequence	1.5	TSA: Zea mays contig25057, mRNA sequence	NA	coding protein	psRNATarget
EU957761.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   =|=|-|||||||=||||||||||| targets:295   UUUA-UCCGUUUUGUUUUAGUUGU   317 Target Full Sequence	1.5	Zea mays clone 1614826 mRNA sequence	NA	coding protein	psRNATarget
LQ241813.1	ncRNA:21   UGAGGCAAAGCAAAAUCAACA   1   *||||||||=||||||||||| targets:1   CCUCCGUUUUGUUUUAGUUGU   21 Target Full Sequence	1.5	Sequence 7808 from Patent EP2985353	NA	coding protein	psRNATarget
HI409683.1	ncRNA:21   UGAGGCAAAGCAAAAUCAACA   1   *||||||||=||||||||||| targets:1   CCUCCGUUUUGUUUUAGUUGU   21 Target Full Sequence	1.5	Sequence 7808 from Patent EP2074227	NA	coding protein	psRNATarget
JB170144.1	ncRNA:21   UGAGGCAAAGCAAAAUCAACA   1   *||||||||=||||||||||| targets:1   CCUCCGUUUUGUUUUAGUUGU   21 Target Full Sequence	1.5	Sequence 7808 from Patent EP2559767	NA	coding protein	psRNATarget
EU948540.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   ||||=|=||**||||||||||||| targets:701   CUCAUUUCGACUCGUUUUAGUUGU   724 Target Full Sequence	3.0	Zea mays clone 379771 mRNA sequence	NA	coding protein	psRNATarget
EU976025.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   ||=*=||||||||*|||||||||| targets:830   CUUUUUCCGUUUCUUUUUAGUUGU   853 Target Full Sequence	1.5	Zea mays clone 508899 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152046.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   ||=*=||||||||*|||||||||| targets:830   CUUUUUCCGUUUCUUUUUAGUUGU   853 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278927 (LOC100278927), mRNA	NA	coding protein	psRNATarget
NM_001352327.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||*=||=|||||*|||||||||| targets:2671   CUCCUUCUGUUUCUUUUUAGUUGU   2694 Target Full Sequence	2.5	Zea mays delta-1-pyrroline-5-carboxylate synthase-like (LOC103630430), mRNA	NA	coding protein	psRNATarget
LQ241681.1	ncRNA:20   GAGGCAAAGC-AAAAUCAACA   1   ||||||||||-|||||||||| targets:1   CUCCGUUUCGGUUUUAGUUGU   21 Target Full Sequence	3.0	Sequence 7676 from Patent EP2985353	NA	coding protein	psRNATarget
JB170012.1	ncRNA:20   GAGGCAAAGC-AAAAUCAACA   1   ||||||||||-|||||||||| targets:1   CUCCGUUUCGGUUUUAGUUGU   21 Target Full Sequence	3.0	Sequence 7676 from Patent EP2559767	NA	coding protein	psRNATarget
HI409551.1	ncRNA:20   GAGGCAAAGC-AAAAUCAACA   1   ||||||||||-|||||||||| targets:1   CUCCGUUUCGGUUUUAGUUGU   21 Target Full Sequence	3.0	Sequence 7676 from Patent EP2074227	NA	coding protein	psRNATarget
HI406120.1	ncRNA:21   UGAGGCAAAGCAAAAUCAACA   1   *|*|||||||||||||||||| targets:1   CCCCCGUUUCGUUUUAGUUGU   21 Target Full Sequence	1.0	Sequence 4245 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238250.1	ncRNA:21   UGAGGCAAAGCAAAAUCAACA   1   *|*|||||||||||||||||| targets:1   CCCCCGUUUCGUUUUAGUUGU   21 Target Full Sequence	1.0	Sequence 4245 from Patent EP2985353	NA	coding protein	psRNATarget
JB166581.1	ncRNA:21   UGAGGCAAAGCAAAAUCAACA   1   *|*|||||||||||||||||| targets:1   CCCCCGUUUCGUUUUAGUUGU   21 Target Full Sequence	1.0	Sequence 4245 from Patent EP2559767	NA	coding protein	psRNATarget
JB166818.1	ncRNA:23   AGUGAGGCAAAGCAAAAUCAACA   1   |=*|||=|||||*|||||||||| targets:1   UUUCUCUGUUUCUUUUUAGUUGU   23 Target Full Sequence	2.5	Sequence 4482 from Patent EP2559767	NA	coding protein	psRNATarget
HI406357.1	ncRNA:23   AGUGAGGCAAAGCAAAAUCAACA   1   |=*|||=|||||*|||||||||| targets:1   UUUCUCUGUUUCUUUUUAGUUGU   23 Target Full Sequence	2.5	Sequence 4482 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238487.1	ncRNA:23   AGUGAGGCAAAGCAAAAUCAACA   1   |=*|||=|||||*|||||||||| targets:1   UUUCUCUGUUUCUUUUUAGUUGU   23 Target Full Sequence	2.5	Sequence 4482 from Patent EP2985353	NA	coding protein	psRNATarget
EU955357.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   *|=*||=||||||*|||||||||| targets:1258   GUUUCUUCGUUUCUUUUUAGUUGU   1281 Target Full Sequence	2.5	Zea mays clone 1529261 senescence-inducible chloroplast stay-green protein 1 mRNA, complete cds; nuclear gene for chloroplast product	NA	coding protein	psRNATarget
NM_001112301.2	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   *|=*||=||||||*|||||||||| targets:1320   GUUUCUUCGUUUCUUUUUAGUUGU   1343 Target Full Sequence	2.5	Zea mays senescence-inducible chloroplast stay-green protein 2 (SGR2), mRNA	NA	coding protein	psRNATarget
HI407229.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||-|*|||||||*|||||||||| targets:8   CUC-CCCCGUUUCUUUUUAGUUGU   30 Target Full Sequence	2.5	Sequence 5354 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239359.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||-|*|||||||*|||||||||| targets:8   CUC-CCCCGUUUCUUUUUAGUUGU   30 Target Full Sequence	2.5	Sequence 5354 from Patent EP2985353	NA	coding protein	psRNATarget
JB167690.1	ncRNA:24   GAGUGAGGCAAAGCAAAAUCAACA   1   |||-|*|||||||*|||||||||| targets:8   CUC-CCCCGUUUCUUUUUAGUUGU   30 Target Full Sequence	2.5	Sequence 5354 from Patent EP2559767	NA	coding protein	psRNATarget