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BaseInfo

ncRNA ID	novel_zma_miR1800
Species	Zea mays
Class	miRNA
Genome position	Chr6:154778290-154778339 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2287164;SRR2089700
Length	24
Mature sequence(if miRNA)	1 - GGAGGGGAUUGAGGUGGAAAUAAA - 24
Stem-loop(if miRNA)	--              U      AA   GGAGGGGAUUGAGG GGAAAU  A   |||||||||||||| ||||||   CUUCCCCUAACUUC CUUUUA  C AA              U      AU
Stem-loop sequence	GGAGGGGAUUGAGGUGGAAAUAAACUAAUUUUCUCUUCAAUCCCCUUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ055746.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   |||||||=|||||||||||||||| targets:69   UUUAUUUUCACCUCAAUCCCCUCC   92 Target Full Sequence	1.0	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
EU941872.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   |||||||||||||||||||=|||| targets:89   UUUAUUUCCACCUCAAUCCUCUCC   112 Target Full Sequence	1.5	Zea mays clone 1471472 mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   |||||||=|||||||||||||||| targets:35   UUUAUUUUCACCUCAAUCCCCUCC   58 Target Full Sequence	1.0	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   ||*||||||||||||||||=|||| targets:2423   UUCAUUUCCACCUCAAUCCUCUCC   2446 Target Full Sequence	1.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
XM_020539803.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   ||*|||||=||||||||||=|||| targets:830   UUCAUUUCUACCUCAAUCCUCUCC   853 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001347002.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   ||*|||||=||||||||||=|||| targets:1140   UUCAUUUCUACCUCAAUCCUCUCC   1163 Target Full Sequence	2.5	Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), mRNA	NA	coding protein	psRNATarget
XM_008658575.2	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   ||*|||||=||||||||||=|||| targets:1152   UUCAUUUCUACCUCAAUCCUCUCC   1175 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   ||*||||||*|||||||||||||| targets:79   UUCAUUUCCCCCUCAAUCCCCUCC   102 Target Full Sequence	1.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   ||*||||||*|||||||||||||| targets:2144   UUAAUUUCCCCCUCAAUCCCCUCC   2167 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ071161.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   *|*|||||=|||||||||||=||| targets:82   CUAAUUUCUACCUCAAUCCCUUCC   105 Target Full Sequence	2.5	TSA: Zea mays contig06798, mRNA sequence	NA	coding protein	psRNATarget
XM_020547122.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   **||*||||||||=|||||||||| targets:285   ACUAAUUCCACCUUAAUCCCCUCC   308 Target Full Sequence	1.5	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547119.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   **||*||||||||=|||||||||| targets:393   ACUAAUUCCACCUUAAUCCCCUCC   416 Target Full Sequence	1.5	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403018.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   *|*||||||*=||||||||||||| targets:48   CUAAUUUCCUUCUCAAUCCCCUCC   71 Target Full Sequence	2.0	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
JB163479.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   *|*||||||*=||||||||||||| targets:48   CUAAUUUCCUUCUCAAUCCCCUCC   71 Target Full Sequence	2.0	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   *|*||||||*=||||||||||||| targets:48   CUAAUUUCCUUCUCAAUCCCCUCC   71 Target Full Sequence	2.0	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020543595.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   *|*|||||=*|||||||||||||| targets:1511   CUAAUUUCUCCCUCAAUCCCCUCC   1534 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109942132 (LOC109942132), mRNA	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   *|*||||||*|||||||=|||||| targets:1841   CUAAUUUCCUCCUCAAUUCCCUCC   1864 Target Full Sequence	2.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   *|*||||||*|||||||||||||= targets:1792   GUCAUUUCCCCCUCAAUCCCCUCU   1815 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   *|*||||||*|||||||=|||||| targets:2279   CUAAUUUCCUCCUCAAUUCCCUCC   2302 Target Full Sequence	2.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661692.2	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X18, mRNA	NA	coding protein	psRNATarget
XM_008661691.2	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X17, mRNA	NA	coding protein	psRNATarget
XM_008661689.2	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020544136.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020544139.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X16, mRNA	NA	coding protein	psRNATarget
XM_020544133.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020544131.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020544137.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020544135.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020544134.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020544132.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020544126.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544125.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544130.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020544127.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544129.1	ncRNA:24   AAAU-AAAGGUGGAGUUAGGGGAGG   1   **||-|||||*|||||||||||||| targets:2255   GCUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AAAUAAAGGUGGAGUUAGGGGAGG   1   *|*|||||=*=||||||||||||| targets:1457   CUAAUUUCUCUCUCAAUCCCCUCC   1480 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget