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BaseInfo

ncRNA ID	novel_zma_miR1796
Species	Zea mays
Class	miRNA
Genome position	Chr6:151750389-151750489 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2287162;SRR2287165;SRR5451005;SRR2089699;SRR2089701;SRR2089707
Length	24
Mature sequence(if miRNA)	78 - AAAGUGUGGCAAGUUAGACAGCGA - 101
Stem-loop(if miRNA)	--U   G      A           AC   A    A  C   CGAAU     AA    UUG CUAACU UGUCACACUUU  CUA UUUU GU GUU     UGAGG  C    ||| |||||| |||||||||||  ||| |||| || |||     |||||    GAC GAUUGA ACGGUGUGAAA  GAU GAAA CA CAG     AUUCC  U AGC   A      -           CC   G    A  -   -----     AA
Stem-loop sequence	UUUGGCUAACUAUGUCACACUUUACCUAAUUUUAGUCGUUCGAAUUGAGGAACUAACCUUAGACACAAAAGGUAGCCAAAGUGUGGCAAGUUAGACAGCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ057573.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |||||||||||=|||||||||||| targets:247   UCGCUGUCUAAUUUGCCACACUUU   270 Target Full Sequence	1.5	TSA: Zea mays contig58695, mRNA sequence	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||||||*||||||||||||||||| targets:15   UCGCUGCCUAACUUGCCACACUUU   38 Target Full Sequence	1.0	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||||||*||||||||||||||||| targets:15   UCGCUGCCUAACUUGCCACACUUU   38 Target Full Sequence	1.0	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||||||*||||||||||||||||| targets:15   UCGCUGCCUAACUUGCCACACUUU   38 Target Full Sequence	1.0	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||||||*||||||||=|||||||| targets:15   UCGCUGCCUAACUUGUCACACUUU   38 Target Full Sequence	2.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||||||*||||||||=|||||||| targets:15   UCGCUGCCUAACUUGUCACACUUU   38 Target Full Sequence	2.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||||||*||||||||=|||||||| targets:15   UCGCUGCCUAACUUGUCACACUUU   38 Target Full Sequence	2.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
JB163753.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||||||*=|||||||||||||||| targets:15   UCGCUGCUUAACUUGCCACACUUU   38 Target Full Sequence	2.0	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
HI403292.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||||||*=|||||||||||||||| targets:15   UCGCUGCUUAACUUGCCACACUUU   38 Target Full Sequence	2.0	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||||||*=|||||||||||||||| targets:15   UCGCUGCUUAACUUGCCACACUUU   38 Target Full Sequence	2.0	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |=|*|||||||||||||||||||| targets:1480   UUGGUGUCUAACUUGCCACACUUU   1503 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |=|*|||||||||||||||||||| targets:3004   UUGAUGUCUAACUUGCCACACUUU   3027 Target Full Sequence	0.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |=|*|||||||||||||||||||| targets:3132   UUGAUGUCUAACUUGCCACACUUU   3155 Target Full Sequence	0.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |=|*|||||||||||||||||||| targets:3139   UUGAUGUCUAACUUGCCACACUUU   3162 Target Full Sequence	0.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU968686.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||*|||*||||||||||||||||| targets:619   UCACUGCCUAACUUGCCACACUUU   642 Target Full Sequence	1.0	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||*|||*||||||||||||||||| targets:602   UCACUGCCUAACUUGCCACACUUU   625 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||*|||*||||||||||||||||| targets:637   UCACUGCCUAACUUGCCACACUUU   660 Target Full Sequence	1.0	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
BT033837.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |=|*||*||||||||||||||||| targets:927   UUGAUGCCUAACUUGCCACACUUU   950 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137099.2	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |=|*||*||||||||||||||||| targets:1415   UUGAUGCCUAACUUGCCACACUUU   1438 Target Full Sequence	1.0	Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA	NA	coding protein	psRNATarget
AY109437.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |=|*||*||||||||||||||||| targets:1425   UUGAUGCCUAACUUGCCACACUUU   1448 Target Full Sequence	1.0	Zea mays CL903_-1 mRNA sequence	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |=|*||*||||||||||||||||| targets:706   UUGAUGGCUAACUUGCCACACUUU   729 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |=|*||*||||||||||||||||| targets:706   UUGAUGGCUAACUUGCCACACUUU   729 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |=|*||*||||||||||||||||| targets:706   UUGAUGGCUAACUUGCCACACUUU   729 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |=|*||*||||||||||||||||| targets:2671   UUGAUGGCUAACUUGCCACACUUU   2694 Target Full Sequence	1.0	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540795.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||-|||*|||||||||||||=||| targets:690   UC-CUGCCUAACUUGCCACAUUUU   712 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT018862.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||**||*||||||||||||||||| targets:1045   UCAGUGCCUAACUUGCCACACUUU   1068 Target Full Sequence	1.0	Zea mays clone EL01N0559E06.d mRNA sequence	NA	coding protein	psRNATarget
EZ066409.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   ||-|||*||||*|||||||||||| targets:4   UC-CUGCCUAAGUUGCCACACUUU   26 Target Full Sequence	2.5	TSA: Zea mays contig02043, mRNA sequence	NA	coding protein	psRNATarget
BT065116.1	ncRNA:24   AGCGACAGAUUGAACGGUGUGAAA   1   |||=*|*||*|||||||||||||| targets:976   UCGUAGCCUCACUUGCCACACUUU   999 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds	NA	coding protein	psRNATarget