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BaseInfo

ncRNA ID	novel_zma_miR1792
Species	Zea mays
Class	miRNA
Genome position	Chr6:121070218-121070286 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089713;SRR2287031;SRR2287159
Length	19
Mature sequence(if miRNA)	1 - AGGGGAUUGGAGAGGCUAA - 19
Stem-loop(if miRNA)	--         G     C       U      AUA   AGGGGAUUG AGAGG UAAAAUU CUCUUU   A   ||||||||| ||||| ||||||| ||||||   UCCUCUAAC UCUCC AUUUUAG GAGAAG   G UC         A     A       -      AAU
Stem-loop sequence	AGGGGAUUGGAGAGGCUAAAAUUUCUCUUUAUAAGUAAGAAGAGGAUUUUAACCUCUACAAUCUCCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY104284.1	ncRNA:19   AAUCGGAGAGGUUAGGGGA   1   |||||||||||=||||||| targets:1003   UUAGCCUCUCCGAUCCCCU   1021 Target Full Sequence	1.5	Zea mays PCO103339 mRNA sequence	NA	coding protein	psRNATarget
BT017648.1	ncRNA:19   AAU-CGGAGAGGUUAGGGGA   1   |||-|||||||||||||||| targets:165   UUAAGCCUCUCCAAUCCCCU   184 Target Full Sequence	2.0	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
AY108273.1	ncRNA:19   AAUCGGAGAGGUUAGGGGA   1   ||||||*|||||||||||| targets:331   UUAGCCCCUCCAAUCCCCU   349 Target Full Sequence	1.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:19   AAUCGGAGAGGUUAGGGGA   1   ||||||*|||||||||||| targets:3499   UUAGCCCCUCCAAUCCCCU   3517 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:19   AAUCGGAGAGGUUAGGGGA   1   ||||||*|||||||||||| targets:3534   UUAGCCCCUCCAAUCCCCU   3552 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:19   AAUCGGAGAGGUUAGGGGA   1   |||*||*|||||||||||| targets:683   UUAUCCCCUCCAAUCCCCU   701 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:19   AAUCGGAGAGGUUAGGGGA   1   |||*||*|||||||||||| targets:1030   UUAACCCCUCCAAUCCCCU   1048 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:19   AAUCGGAGAGGUUAGGGGA   1   |||*||*|||||||||||| targets:1563   UUAUCCCCUCCAAUCCCCU   1581 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:19   AAUCGGAGAGGUUAGGGGA   1   |||*||*|||||||||||| targets:1583   UUAUCCCCUCCAAUCCCCU   1601 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:19   AAUCGGAGAGGUUAGGGGA   1   |||*||*|||||||||||| targets:1607   UUAUCCCCUCCAAUCCCCU   1625 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:19   AAUCGGAGAGGUUAGGGGA   1   |||*||*|||||||||||| targets:1640   UUAUCCCCUCCAAUCCCCU   1658 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget