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BaseInfo

ncRNA ID novel_zma_miR1790
Species Zea mays
Class miRNA
Genome position Chr6:116380886-116380949 [+]
Reference genome RefGen_v4
Source SRR2089711
Length 23
Mature sequence(if miRNA) 1 - GCGGCACGCGGGCCGGUCGGGCA - 23
Stem-loop(if miRNA) --     AC       G  CG   A    CC  U
  GCGGC  GCGGGCC GU  GGC CGAC  GA U
  |||||  ||||||| ||  ||| ||||  ||
  UGCCG  UGCCCGG CA  CCG GCUG  CU A
CG     --       G  AU   G    --  U
Stem-loop sequence GCGGCACGCGGGCCGGUCGGGCACGACCCGAUUAUUCGUCGGGCCUAACGGGCCCGUGCCGUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020541882.1
ncRNA:23   ACG-GGCUGGCCGGGCGCACGGCG   1
  *||-||||||*||||||||||=||
targets:54   CGCGCCGACCCGCCCGCGUGCUGC   77

2.5 PREDICTED: Zea mays glycine, alanine and asparagine-rich protein-like (LOC109941323), mRNA NA coding protein psRNATarget
XM_020541882.1
ncRNA:23   ACG-GGCUGGCCGGGCGCACGGCG   1
  *||-||||||*||||||||||=||
targets:239   CGCGCCGACCCGCCCGCGUGCUGC   262

2.5 PREDICTED: Zea mays glycine, alanine and asparagine-rich protein-like (LOC109941323), mRNA NA coding protein psRNATarget