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BaseInfo

ncRNA ID	osa-miR399h
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:26307936-26308034 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	69 - UGCCAAAGGAGACUUGCCCAG - 89
Stem-loop(if miRNA)	CCA      A              C           ------------C    G    UGCAUU CUGGGCAGGUCUCC UUGGCAGUGGC             GAUC A    |||||| |||||||||||||| |||||||||||             |||| G    ACGUAA GACCCGUUCAGAGG AACCGUCACCG             CUAG C UAG      C              A           AAAACGCACCAAA    U
Stem-loop sequence	CCAUGCAUUACUGGGCAGGUCUCCCUUGGCAGUGGCCGAUCGAGCUGAUCAAACCACGCAAAAGCCACUGCCAAAGGAGACUUGCCCAGCAAUGCAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241747.1	ncRNA:21   GACCCGUUCAGAGGAAACCGU   1   ||||||||*|||||||||||| targets:796   CUGGGCAAAUCUCCUUUGGCA   816 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence	NA	coding protein	psRNATarget
AK241747.1	ncRNA:21   GACCCGUUCAGAGGAAACCGU   1   =|||||||*|||||||||||| targets:925   UUGGGCAAAUCUCCUUUGGCA   945 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence	NA	coding protein	psRNATarget
AK241747.1	ncRNA:21   GACCCGUUCAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:880   CCGGGCAAAUCUCCUUUGGCA   900 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence	NA	coding protein	psRNATarget
AK241747.1	ncRNA:21   GACCCGUUCAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:842   UCGGGCAAAUCUCCUUUGGCA   862 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence	NA	coding protein	psRNATarget
AK241747.1	ncRNA:21   GACCCGUUCAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:713   UAGGGCAAAUCUCCUUUGGCA   733 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence	NA	coding protein	psRNATarget
XM_015784159.1	ncRNA:21   GACCCGUUCAGAGGAAACCGU   1   ||||||||*|||||||||||| targets:903   CUGGGCAAAUCUCCUUUGGCA   923 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC4339579)	coding protein	psRNATarget
XM_015784159.1	ncRNA:21   GACCCGUUCAGAGGAAACCGU   1   =|||||||*|||||||||||| targets:1032   UUGGGCAAAUCUCCUUUGGCA   1052 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC4339579)	coding protein	psRNATarget
XM_015784159.1	ncRNA:21   GACCCGUUCAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:987   CCGGGCAAAUCUCCUUUGGCA   1007 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC4339579)	coding protein	psRNATarget
XM_015784159.1	ncRNA:21   GACCCGUUCAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:949   UCGGGCAAAUCUCCUUUGGCA   969 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC4339579)	coding protein	psRNATarget
XM_015784159.1	ncRNA:21   GACCCGUUCAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:820   UAGGGCAAAUCUCCUUUGGCA   840 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC4339579)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).