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BaseInfo

ncRNA ID novel_zma_miR1789
Species Zea mays
Class miRNA
Genome position Chr10:89693291-89693372 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287031;SRR2287159;SRR2287160;SRR2287163;SRR2287164;SRR2287165;SRR1997865;SRR5100255;SRR5451003;SRR5451004;SRR2089700;SRR2089701;SRR2089705
Length 21
Mature sequence(if miRNA) 1 - UGAAGGGGAUUGAGGGGGCUA - 21
Stem-loop(if miRNA) --  A              G   A     UC   A   CAA
  UG AGGGGAUUGAGGGG CUA AAUCC  CAC AUU   U
  || |||||||||||||| ||| |||||  ||| |||
  AC UUCCCUAACUCCCC GAU UUAGG  GUG UAA   U
UU  C              G   C     GA   A   AUU
Stem-loop sequence UGAAGGGGAUUGAGGGGGCUAAAAUCCUCCACAAUUCAAUUUUAAAUAGUGAGGGAUUCUAGGCCCCUCAAUCCCUUCCAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI406027.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  |||||||||||||||||||||
targets:86   UAGCCCCCUCAAUCCCCUUCA   106

0.0 Sequence 4152 from Patent EP2074227 NA coding protein psRNATarget
LQ238157.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  |||||||||||||||||||||
targets:86   UAGCCCCCUCAAUCCCCUUCA   106

0.0 Sequence 4152 from Patent EP2985353 NA coding protein psRNATarget
JB166488.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  |||||||||||||||||||||
targets:86   UAGCCCCCUCAAUCCCCUUCA   106

0.0 Sequence 4152 from Patent EP2559767 NA coding protein psRNATarget
BT062966.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  |||||||||||||||||||||
targets:2622   UAGCCCCCUCAAUCCCCUUCA   2642

0.0 Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds NA coding protein psRNATarget
NM_001174804.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  |||||||||||||||||||||
targets:2622   UAGCCCCCUCAAUCCCCUUCA   2642

0.0 Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA NA coding protein psRNATarget
XM_008663899.2
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  |||||||||||||||||||||
targets:2710   UAGCCCCCUCAAUCCCCUUCA   2730

0.0 PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546477.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  ||||||||||||||||||*||
targets:8   UAGCCCCCUCAAUCCCCUCCA   28

1.5 PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA NA coding protein psRNATarget
XM_008654031.2
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  ||||=|||||||||||||*||
targets:1672   UAGCUCCCUCAAUCCCCUCCA   1692

2.5 PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235121.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  *|*|=||||||||||||||||
targets:82   AAUCUCCCUCAAUCCCCUUCA   102

2.0 Sequence 1116 from Patent EP2985353 NA coding protein psRNATarget
HI402991.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  *|*|=||||||||||||||||
targets:82   AAUCUCCCUCAAUCCCCUUCA   102

2.0 Sequence 1116 from Patent EP2074227 NA coding protein psRNATarget
JB163452.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  *|*|=||||||||||||||||
targets:82   AAUCUCCCUCAAUCCCCUUCA   102

2.0 Sequence 1116 from Patent EP2559767 NA coding protein psRNATarget
AY108800.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  *|||||=|||||||||||*||
targets:780   CAGCCCUCUCAAUCCCCUCCA   800

2.5 Zea mays PCO127746 mRNA sequence NA coding protein psRNATarget
XM_008645760.2
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  *|||||=|||||||||||*||
targets:1467   CAGCCCUCUCAAUCCCCUCCA   1487

2.5 PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase 2 (pco127746), transcript variant X1, mRNA NA coding protein psRNATarget
AY105859.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  |**||||||=|||||||||||
targets:1176   UUUCCCCCUUAAUCCCCUUCA   1196

2.5 Zea mays PCO136287 mRNA sequence NA coding protein psRNATarget
XM_020543383.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  |**||||=|||||||||||||
targets:230   UUUCCCCUUCAAUCCCCUUCA   250

2.0 PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA NA coding protein psRNATarget
HI403493.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  *|*|||||||||||||||*||
targets:30   CAUCCCCCUCAAUCCCCUCCA   50

2.5 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
JB163954.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  *|*|||||||||||||||*||
targets:30   CAUCCCCCUCAAUCCCCUCCA   50

2.5 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
LQ235623.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  *|*|||||||||||||||*||
targets:30   CAUCCCCCUCAAUCCCCUCCA   50

2.5 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
EZ049235.1
ncRNA:19   CGGGGGAGUUAGGGGAAGU   1
  *||||=||||||||||||*
targets:1   UCCCCUUCAAUCCCCUUCU   19

3.0 TSA: Zea mays contig50353, mRNA sequence NA coding protein psRNATarget
EZ077410.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  ***||||||||||||*|||||
targets:60   AUUCCCCCUCAAUCCACUUCA   80

2.5 TSA: Zea mays contig13047, mRNA sequence NA coding protein psRNATarget
XM_008680349.2
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  *|*||||||||||||||*|||
targets:1961   AAACCCCCUCAAUCCCCCUCA   1981

2.5 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
EU954524.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  ***||||||||||||*|||||
targets:60   AUUCCCCCUCAAUCCACUUCA   80

2.5 Zea mays clone 1469353 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149312.1
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  ***||||||||||||*|||||
targets:60   AUUCCCCCUCAAUCCACUUCA   80

2.5 Zea mays uncharacterized LOC100275152 (LOC100275152), mRNA NA coding protein psRNATarget
XM_008681548.2
ncRNA:21   AUCGGGGGAGUUAGGGGAAGU   1
  ***||||||||||||*|||||
targets:68   AUUCCCCCUCAAUCCACUUCA   88

2.5 PREDICTED: Zea mays hypothetical protein (LOC103654710), mRNA NA coding protein psRNATarget
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