Search result

BaseInfo

ncRNA ID novel_zma_miR1787
Species Zea mays
Class miRNA
Genome position Chr5:95088604-95088696 [+]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 1 - AUUCAUGUGGAUUGAGCGGGAUUA - 24
Stem-loop(if miRNA) --   -          -  GC     UA UU     U   UCUCAAGC
  AUU CAUGUGGAUU GA  GGGAU  G  AAGUU AAA        A
  ||| |||||||||| ||  |||||  |  ||||| |||
  UAA GUAUAUUUAA CU  CCCUA  U  UUUAA UUU        A
UA   U          U  -A     GC UU     U   UCUAACUA
Stem-loop sequence AUUCAUGUGGAUUGAGCGGGAUUAGUUAAGUUUAAAUCUCAAGCAAAUCAAUCUUUUUAAUUUUUUCGAUCCCAUCUAAUUUAUAUGUAAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539703.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||||||||||||||||=||
targets:64   CAAUCCCGCUCAAUCCACAUGGAU   87

1.5 PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||||||||||||||||=||
targets:2908   CAAUCCCGCUCAAUCCACAUGGAU   2931

1.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||||||||||||||||=||
targets:2804   CAAUCCCGCUCAAUCCACAUGGAU   2827

1.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008664275.2
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||||||||||||||||=||
targets:2144   CAAUCCCGCUCAAUCCACAUGGAU   2167

1.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA NA coding protein psRNATarget
BT018903.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||||||||||||||||=||
targets:2033   CAAUCCCGCUCAAUCCACAUGGAU   2056

1.5 Zea mays clone EL01T0208C03.d mRNA sequence NA coding protein psRNATarget
XM_008664276.2
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||||||||||||||||=||
targets:2051   CAAUCCCGCUCAAUCCACAUGGAU   2074

1.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645867.2
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||||||||||||||||=||
targets:1956   CAAUCCCGCUCAAUCCACAUGGAU   1979

1.5 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553538.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||||||||||||||||=||
targets:1890   CAAUCCCGCUCAAUCCACAUGGAU   1913

1.5 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645912.2
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||||||||||||||||=||
targets:1623   CAAUCCCGCUCAAUCCACAUGGAU   1646

1.5 PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001176594.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||||||||||||||||=||
targets:1132   CAAUCCCGCUCAAUCCACAUGGAU   1155

1.5 Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA NA coding protein psRNATarget
BT068797.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||||||||||||||||=||
targets:1132   CAAUCCCGCUCAAUCCACAUGGAU   1155

1.5 Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds NA coding protein psRNATarget
AY103719.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *|||||=||||||||||||||=||
targets:882   CAAUCCUGCUCAAUCCACAUGGAU   905

2.5 Zea mays PCO137008 mRNA sequence NA coding protein psRNATarget
JB166364.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *|||||=||||||||||||||=||
targets:83   CAAUCCUGCUCAAUCCACAUGGAU   106

2.5 Sequence 4028 from Patent EP2559767 NA coding protein psRNATarget
LQ238033.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *|||||=||||||||||||||=||
targets:83   CAAUCCUGCUCAAUCCACAUGGAU   106

2.5 Sequence 4028 from Patent EP2985353 NA coding protein psRNATarget
HI405903.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *|||||=||||||||||||||=||
targets:83   CAAUCCUGCUCAAUCCACAUGGAU   106

2.5 Sequence 4028 from Patent EP2074227 NA coding protein psRNATarget
BT018999.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  |||||||*|||||||||=||||||
targets:465   UAAUCCCUCUCAAUCCAUAUGAAU   488

2.5 Zea mays clone Contig487.F mRNA sequence NA coding protein psRNATarget
EZ064016.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*||||||||||||||||
targets:124   CAAUCCCACUCAAUCCACAUGAAU   147

1.0 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  ||*|=||*|||||||||||||=||
targets:3516   UAUUUCCUCUCAAUCCACAUGGAU   3539

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  ||*|=||*|||||||||||||=||
targets:3485   UAUUUCCUCUCAAUCCACAUGGAU   3508

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  ||*|=||*|||||||||||||=||
targets:3472   UAUUUCCUCUCAAUCCACAUGGAU   3495

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:5808   CAAUCCCACUCAAUCCACAUGGAU   5831

2.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1233   CAAUCCCACUCAAUCCACAUGGAU   1256

2.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1203   CAAUCCCACUCAAUCCACAUGGAU   1226

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1203   CAAUCCCACUCAAUCCACAUGGAU   1226

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1085   CAAUCCCACUCAAUCCACAUGGAU   1108

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1962   CAAUCCCACUCAAUCCACAUGGAU   1985

2.5 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1962   CAAUCCCACUCAAUCCACAUGGAU   1985

2.5 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:2504   CAAUCCCACUCAAUCCACAUGGAU   2527

2.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:2215   CAAUCCCACUCAAUCCACAUGGAU   2238

2.5 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1819   CAAUCCCACUCAAUCCACAUGGAU   1842

2.5 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1819   CAAUCCCACUCAAUCCACAUGGAU   1842

2.5 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1534   CAAUCCCACUCAAUCCACAUGGAU   1557

2.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1534   CAAUCCCACUCAAUCCACAUGGAU   1557

2.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
BT066987.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1419   CAAUCCCACUCAAUCCACAUGGAU   1442

2.5 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:532   CAAUCCCACUCAAUCCACAUGGAU   555

2.5 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
BT041052.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1128   CAAUCCCACUCAAUCCACAUGGAU   1151

2.5 Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds NA coding protein psRNATarget
NM_001147844.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:1128   CAAUCCCACUCAAUCCACAUGGAU   1151

2.5 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
BT085319.2
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:180   CAAUCCCACUCAAUCCACAUGGAU   203

2.5 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:878   CAAUCCCACUCAAUCCACAUGGAU   901

2.5 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
EU951448.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:749   CAAUCCCACUCAAUCCACAUGGAU   772

2.5 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
EU942673.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:95   CAAUCCCACUCAAUCCACAUGGAU   118

2.5 Zea mays clone 1529344 mRNA sequence NA coding protein psRNATarget
LQ235224.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163555.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
HI403094.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
JB163551.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
HI403090.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
LQ235220.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
LQ235150.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1145 from Patent EP2985353 NA coding protein psRNATarget
JB163481.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1145 from Patent EP2559767 NA coding protein psRNATarget
HI403020.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1145 from Patent EP2074227 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:93   CAAUCCCACUCAAUCCACAUGGAU   116

2.5 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
JB166302.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:93   CAAUCCCACUCAAUCCACAUGGAU   116

2.5 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
HI405841.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:93   CAAUCCCACUCAAUCCACAUGGAU   116

2.5 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
HI405902.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:84   CAAUCCCACUCAAUCCACAUGGAU   107

2.5 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
JB166363.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:84   CAAUCCCACUCAAUCCACAUGGAU   107

2.5 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:84   CAAUCCCACUCAAUCCACAUGGAU   107

2.5 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
HI405889.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:83   CAAUCCCACUCAAUCCACAUGGAU   106

2.5 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:83   CAAUCCCACUCAAUCCACAUGGAU   106

2.5 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|||||||||||||=||
targets:83   CAAUCCCACUCAAUCCACAUGGAU   106

2.5 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI403043.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||=|*=|||||||||||||||
targets:102   CAAUCUCAUUCAAUCCACAUGAAU   125

3.0 Sequence 1168 from Patent EP2074227 NA coding protein psRNATarget
JB163504.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||=|*=|||||||||||||||
targets:102   CAAUCUCAUUCAAUCCACAUGAAU   125

3.0 Sequence 1168 from Patent EP2559767 NA coding protein psRNATarget
LQ235173.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||=|*=|||||||||||||||
targets:102   CAAUCUCAUUCAAUCCACAUGAAU   125

3.0 Sequence 1168 from Patent EP2985353 NA coding protein psRNATarget
EU952677.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  ||||*||*|||||||||||||=||
targets:989   UAAUACCACUCAAUCCACAUGGAU   1012

2.5 Zea mays clone 1286167 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
BT042439.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  ||||*||*|||||||||||||=||
targets:967   UAAUACCACUCAAUCCACAUGGAU   990

2.5 Zea mays full-length cDNA clone ZM_BFb0234C02 mRNA, complete cds NA coding protein psRNATarget
BT066125.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  ||||*||*|||||||||||||=||
targets:1076   UAAUACCACUCAAUCCACAUGGAU   1099

2.5 Zea mays full-length cDNA clone ZM_BFb0377H04 mRNA, complete cds NA coding protein psRNATarget
HI409215.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|*=|||||||||||||
targets:78   CAAUCCCACCUAAUCCACAUGAAU   101

3.0 Sequence 7340 from Patent EP2074227 NA coding protein psRNATarget
JB169676.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|*=|||||||||||||
targets:78   CAAUCCCACCUAAUCCACAUGAAU   101

3.0 Sequence 7340 from Patent EP2559767 NA coding protein psRNATarget
LQ241345.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  *||||||*|*=|||||||||||||
targets:78   CAAUCCCACCUAAUCCACAUGAAU   101

3.0 Sequence 7340 from Patent EP2985353 NA coding protein psRNATarget
BT018765.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  **=|=|*||||||||||=||||||
targets:1170   GUGUUCAGCUCAAUCCAUAUGAAU   1193

2.5 Zea mays clone EL01N0524E08.d mRNA sequence NA coding protein psRNATarget
NM_001148335.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  **=|=|*||||||||||=||||||
targets:1149   GUGUUCAGCUCAAUCCAUAUGAAU   1172

2.5 Zea mays Methyltransferase family protein (LOC100273944), mRNA NA coding protein psRNATarget
BT042079.1
ncRNA:24   AUUAGGGCGAGUUAGGUGUACUUA   1
  **=|=|*||||||||||=||||||
targets:1149   GUGUUCAGCUCAAUCCAUAUGAAU   1172

2.5 Zea mays full-length cDNA clone ZM_BFb0126H24 mRNA, complete cds NA coding protein psRNATarget