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BaseInfo

ncRNA ID novel_zma_miR1781
Species Zea mays
Class miRNA
Genome position Chr3:149403811-149403907 [-]
Reference genome RefGen_v4
Source SRR1583944;SRR2287165
Length 24
Mature sequence(if miRNA) 1 - GCAAAGUGUGGCAAGUUAGGCAGG - 24
Stem-loop(if miRNA) --  G      AC               -------------        CG   A
  UG CUAACU  GCCACACUUUGCCUA             AGGUUAGU  UUC A
  || ||||||  |||||||||||||||             ||||||||  ||| A
  AC GAUUGA  CGGUGUGAAACGGAU             UCCAAUCA  AAG U
GG  G      -A               UGAAAAGACGGAU        AG   U
Stem-loop sequence UGGCUAACUACGCCACACUUUGCCUAAGGUUAGUCGUUCAAAUUGAAGAACUAACCUUAGGCAGAAAAGUUAGGCAAAGUGUGGCAAGUUAGGCAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020540795.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  ||||||||||||||||||=|||||
targets:691   CCUGCCUAACUUGCCACAUUUUGC   714

1.5 PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA NA coding protein psRNATarget
LQ235522.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *|||||||||||||||||||||||
targets:17   GCUGCCUAACUUGCCACACUUUGC   40

0.0 Sequence 1517 from Patent EP2985353 NA coding protein psRNATarget
JB163853.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *|||||||||||||||||||||||
targets:17   GCUGCCUAACUUGCCACACUUUGC   40

0.0 Sequence 1517 from Patent EP2559767 NA coding protein psRNATarget
HI403392.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *|||||||||||||||||||||||
targets:17   GCUGCCUAACUUGCCACACUUUGC   40

0.0 Sequence 1517 from Patent EP2074227 NA coding protein psRNATarget
HI403286.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||||||||||||=||||||||||
targets:17   GCUGCCUAACUUGUCACACUUUGC   40

1.5 Sequence 1411 from Patent EP2074227 NA coding protein psRNATarget
LQ235416.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||||||||||||=||||||||||
targets:17   GCUGCCUAACUUGUCACACUUUGC   40

1.5 Sequence 1411 from Patent EP2985353 NA coding protein psRNATarget
JB163747.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||||||||||||=||||||||||
targets:17   GCUGCCUAACUUGUCACACUUUGC   40

1.5 Sequence 1411 from Patent EP2559767 NA coding protein psRNATarget
LQ235422.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||||=||||||||||||||||||
targets:17   GCUGCUUAACUUGCCACACUUUGC   40

1.0 Sequence 1417 from Patent EP2985353 NA coding protein psRNATarget
JB163753.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||||=||||||||||||||||||
targets:17   GCUGCUUAACUUGCCACACUUUGC   40

1.0 Sequence 1417 from Patent EP2559767 NA coding protein psRNATarget
HI403292.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||||=||||||||||||||||||
targets:17   GCUGCUUAACUUGCCACACUUUGC   40

1.0 Sequence 1417 from Patent EP2074227 NA coding protein psRNATarget
BT033837.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  **||||||||||||||||||||||
targets:929   GAUGCCUAACUUGCCACACUUUGC   952

0.0 Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds NA coding protein psRNATarget
NM_001137099.2
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  **||||||||||||||||||||||
targets:1417   GAUGCCUAACUUGCCACACUUUGC   1440

0.0 Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA NA coding protein psRNATarget
AY109437.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  **||||||||||||||||||||||
targets:1427   GAUGCCUAACUUGCCACACUUUGC   1450

0.0 Zea mays CL903_-1 mRNA sequence NA coding protein psRNATarget
BT018862.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  **||||||||||||||||||||||
targets:1047   AGUGCCUAACUUGCCACACUUUGC   1070

0.0 Zea mays clone EL01N0559E06.d mRNA sequence NA coding protein psRNATarget
BT083952.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  **||=|||||||||||||||||||
targets:1482   GGUGUCUAACUUGCCACACUUUGC   1505

0.0 Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds NA coding protein psRNATarget
EU968686.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *|||||||||||||||||||||*|
targets:621   ACUGCCUAACUUGCCACACUUUAC   644

1.5 Zea mays clone 323451 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT065161.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *|||||||||||||||||||||*|
targets:604   ACUGCCUAACUUGCCACACUUUAC   627

1.5 Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds NA coding protein psRNATarget
XM_020550436.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *|||||||||||||||||||||*|
targets:639   ACUGCCUAACUUGCCACACUUUAC   662

1.5 PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA NA coding protein psRNATarget
XM_008660020.2
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  **||=||||||||||||||||||=
targets:3006   GAUGUCUAACUUGCCACACUUUGU   3029

1.0 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660021.2
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  **||=||||||||||||||||||=
targets:3134   GAUGUCUAACUUGCCACACUUUGU   3157

1.0 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020543539.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  **||=||||||||||||||||||=
targets:3141   GAUGUCUAACUUGCCACACUUUGU   3164

1.0 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA NA coding protein psRNATarget
EU958119.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||*|||||||||=||||||||||
targets:931   GCUACCUAACUUGUCACACUUUGC   954

1.5 Zea mays clone 1674247 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149797.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||*|||||||||=||||||||||
targets:931   GCUACCUAACUUGUCACACUUUGC   954

1.5 Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA NA coding protein psRNATarget
EZ066409.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  |||||||||*||||||||||||*|
targets:5   CCUGCCUAAGUUGCCACACUUUAC   28

2.5 TSA: Zea mays contig02043, mRNA sequence NA coding protein psRNATarget
XM_008681572.2
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  ||*|||||||||*|||||||||||
targets:2401   CCAGCCUAACUUACCACACUUUGC   2424

1.5 PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA NA coding protein psRNATarget
AY109434.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  =*|||||||*||||||||||||||
targets:397   UAUGCCUAAGUUGCCACACUUUGC   420

1.0 Zea mays CL2997_-2 mRNA sequence NA coding protein psRNATarget
XM_008660313.2
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  **||*|||||||||||||||||||
targets:708   GAUGGCUAACUUGCCACACUUUGC   731

0.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008660311.2
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  **||*|||||||||||||||||||
targets:708   GAUGGCUAACUUGCCACACUUUGC   731

0.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008660309.2
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  **||*|||||||||||||||||||
targets:708   GAUGGCUAACUUGCCACACUUUGC   731

0.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670840.2
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  **||*|||||||||||||||||||
targets:2673   GAUGGCUAACUUGCCACACUUUGC   2696

0.0 PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA NA coding protein psRNATarget
EZ057573.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *|||=||||=||||||||||||*|
targets:249   GCUGUCUAAUUUGCCACACUUUUC   272

2.5 TSA: Zea mays contig58695, mRNA sequence NA coding protein psRNATarget
EU945170.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||||||*|*||||||||||||||
targets:853   ACUGCCUCAGUUGCCACACUUUGC   876

2.0 Zea mays clone 243250 mRNA sequence NA coding protein psRNATarget
EU966347.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||||||*|*||||||||||||||
targets:1337   ACUGCCUCAGUUGCCACACUUUGC   1360

2.0 Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds NA coding protein psRNATarget
BT065116.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *=*||||*||||||||||||||||
targets:978   GUAGCCUCACUUGCCACACUUUGC   1001

1.0 Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds NA coding protein psRNATarget
LQ235569.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1564 from Patent EP2985353 NA coding protein psRNATarget
JB163900.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1564 from Patent EP2559767 NA coding protein psRNATarget
HI403439.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1564 from Patent EP2074227 NA coding protein psRNATarget
HI403257.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1382 from Patent EP2074227 NA coding protein psRNATarget
LQ235488.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1483 from Patent EP2985353 NA coding protein psRNATarget
LQ235388.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1383 from Patent EP2985353 NA coding protein psRNATarget
HI403260.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1385 from Patent EP2074227 NA coding protein psRNATarget
HI403195.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1320 from Patent EP2074227 NA coding protein psRNATarget
LQ235389.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1384 from Patent EP2985353 NA coding protein psRNATarget
HI403358.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1483 from Patent EP2074227 NA coding protein psRNATarget
JB163718.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1382 from Patent EP2559767 NA coding protein psRNATarget
HI403258.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1383 from Patent EP2074227 NA coding protein psRNATarget
HI403297.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1422 from Patent EP2074227 NA coding protein psRNATarget
JB163656.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1320 from Patent EP2559767 NA coding protein psRNATarget
LQ235386.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1381 from Patent EP2985353 NA coding protein psRNATarget
LQ235385.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1380 from Patent EP2985353 NA coding protein psRNATarget
JB163719.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1383 from Patent EP2559767 NA coding protein psRNATarget
LQ235387.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1382 from Patent EP2985353 NA coding protein psRNATarget
LQ235427.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1422 from Patent EP2985353 NA coding protein psRNATarget
HI403255.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1380 from Patent EP2074227 NA coding protein psRNATarget
JB163819.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1483 from Patent EP2559767 NA coding protein psRNATarget
LQ235390.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1385 from Patent EP2985353 NA coding protein psRNATarget
HI403425.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1550 from Patent EP2074227 NA coding protein psRNATarget
JB163721.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1385 from Patent EP2559767 NA coding protein psRNATarget
LQ235325.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1320 from Patent EP2985353 NA coding protein psRNATarget
HI403256.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1381 from Patent EP2074227 NA coding protein psRNATarget
JB163717.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1381 from Patent EP2559767 NA coding protein psRNATarget
LQ235555.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1550 from Patent EP2985353 NA coding protein psRNATarget
JB163720.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1384 from Patent EP2559767 NA coding protein psRNATarget
JB163758.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1422 from Patent EP2559767 NA coding protein psRNATarget
JB163886.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1550 from Patent EP2559767 NA coding protein psRNATarget
HI403259.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1384 from Patent EP2074227 NA coding protein psRNATarget
JB163716.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:16   CGUGGCUAACUGUGCCACACUUUGC   40

3.0 Sequence 1380 from Patent EP2559767 NA coding protein psRNATarget
EZ517203.1
ncRNA:24   GGACGGAUUGA-ACGGUGUGAAACG   1
  |*||*||||||-|||||||||||||
targets:97   CGUGGCUAACUAUGCCACACUUUGC   121

3.0 TSA: Zea mays cultivar W22 CL614Contig1.betc, mRNA sequence NA coding protein psRNATarget
EZ086875.1
ncRNA:24   GGAC-GGAUUGAACGGUGUGAAACG   1
  |*||-||||||||*||||||||||*
targets:28   CAUGUCCUAACUUACCACACUUUGA   52

2.5 TSA: Zea mays contig22521, mRNA sequence NA coding protein psRNATarget
XM_020543351.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  |||*|||*|*|||||||||||||=
targets:796   CCUACCUCAAUUGCCACACUUUGU   819

3.0 PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA NA coding protein psRNATarget
BT064583.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||*|||*|*||||||||||||||
targets:1645   ACUACCUCAGUUGCCACACUUUGC   1668

2.0 Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds NA coding protein psRNATarget
NM_001150092.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||*|||*|*||||||||||||||
targets:1715   ACUACCUCAGUUGCCACACUUUGC   1738

2.0 Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA NA coding protein psRNATarget
EU960971.1
ncRNA:24   GGACGGAUUGAACGGUGUGAAACG   1
  *||*|||*|*||||||||||||||
targets:1715   ACUACCUCAGUUGCCACACUUUGC   1738

2.0 Zea mays clone 230073 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
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