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BaseInfo

ncRNA ID	novel_zma_miR1779
Species	Zea mays
Class	miRNA
Genome position	Chr5:60188179-60188259 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2287160
Length	24
Mature sequence(if miRNA)	58 - AUCCAUGAUUUGUAGUGACGGUUU - 81
Stem-loop(if miRNA)	--    C     G       --                CCU   ACCG CACUA AAAUCGU  AUUUCUACUGGCGGUU   U   |||| ||||| |||||||  ||||||||||||||||   A   UGGC GUGAU UUUAGUA  UAAAGAUGACCGCCAA   A UU    A     G       CC                AAG
Stem-loop sequence	ACCGCCACUAGAAAUCGUAUUUCUACUGGCGGUUCCUUAAGAAAACCGCCAGUAGAAAUCCAUGAUUUGUAGUGACGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403012.1	ncRNA:24   UUUGGCAGUGAUGUUUAGUACCUA   1   |||||||||||||||||||||||| targets:34   AAACCGUCACUACAAAUCAUGGAU   57 Target Full Sequence	0.0	Sequence 1137 from Patent EP2074227	NA	coding protein	psRNATarget
JB163473.1	ncRNA:24   UUUGGCAGUGAUGUUUAGUACCUA   1   |||||||||||||||||||||||| targets:34   AAACCGUCACUACAAAUCAUGGAU   57 Target Full Sequence	0.0	Sequence 1137 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235142.1	ncRNA:24   UUUGGCAGUGAUGUUUAGUACCUA   1   |||||||||||||||||||||||| targets:34   AAACCGUCACUACAAAUCAUGGAU   57 Target Full Sequence	0.0	Sequence 1137 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235215.1	ncRNA:24   UUUGGCAGUGAUGUUUAGUACCUA   1   ||||||*|||||*||||||||||| targets:16   AAACCGCCACUAGAAAUCAUGGAU   39 Target Full Sequence	2.5	Sequence 1210 from Patent EP2985353	NA	coding protein	psRNATarget
HI403085.1	ncRNA:24   UUUGGCAGUGAUGUUUAGUACCUA   1   ||||||*|||||*||||||||||| targets:16   AAACCGCCACUAGAAAUCAUGGAU   39 Target Full Sequence	2.5	Sequence 1210 from Patent EP2074227	NA	coding protein	psRNATarget
JB163546.1	ncRNA:24   UUUGGCAGUGAUGUUUAGUACCUA   1   ||||||*|||||*||||||||||| targets:16   AAACCGCCACUAGAAAUCAUGGAU   39 Target Full Sequence	2.5	Sequence 1210 from Patent EP2559767	NA	coding protein	psRNATarget
EZ059031.1	ncRNA:24   UUUGGCAGUGAUGUUUAGUACCUA   1   |||=*||*|||||||||||||||* targets:265   AAAUGGUGACUACAAAUCAUGGAA   288 Target Full Sequence	2.0	TSA: Zea mays contig60153, mRNA sequence	NA	coding protein	psRNATarget