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BaseInfo

ncRNA ID novel_zma_miR1773
Species Zea mays
Class miRNA
Genome position Chr5:4148904-4149065 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 21
Mature sequence(if miRNA) 1 - AUUAUACUUUAGUUAUGACAA - 21
Stem-loop(if miRNA) --A                          A               -  U        G         AA     AACACAAU
   UCAUAACUAAAGUAUAAUGUAGUAUU UAAAAACUGUAGUUU CA AAACUUUG UCCCAAACA  GGUCU        A
   |||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||  |||||
   AGUAUUGAUUUCAUAUUAUAUCAUAA GUUUUUGACAUCAAA GU UUUGAAAC AGGGUUUGU  CCGGA        U
AAC                          A               A  U        A         -C     AUUUUCGA
Stem-loop sequence AUCAUAACUAAAGUAUAAUGUAGUAUUAUAAAAACUGUAGUUUCAUAAACUUUGGUCCCAAACAAAGGUCUAACACAAUAUAGCUUUUAAGGCCCUGUUUGGGAACAAAGUUUUUGAAAACUACAGUUUUUGAAAUACUAUAUUAUACUUUAGUUAUGACAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008670967.2
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||||||||||||||=|
targets:3   UUGUCAUAACUAAAGUAUAGU   23

1.5 PREDICTED: Zea mays uncharacterized LOC103646241 (LOC103646241), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008653629.2
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  ||||=||||||||||||||=|
targets:2195   UUGUUAUAACUAAAGUAUAGU   2215

2.5 PREDICTED: Zea mays ribosomal protein S6 kinase (S6K), transcript variant X1, mRNA NA coding protein psRNATarget
BT086479.1
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||||||||||||||*|
targets:2025   UUGUCAUAACUAAAGUAUACU   2045

1.5 Zea mays full-length cDNA clone ZM_BFc0170P12 mRNA, complete cds NA coding protein psRNATarget
AY109060.2
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1657   UUGUCAUGACUAAAGUAUACU   1677

2.5 Zea mays PCO100950 mRNA sequence NA coding protein psRNATarget
XM_008673959.2
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1594   UUGUCAUGACUAAAGUAUACU   1614

2.5 PREDICTED: Zea mays uncharacterized LOC100193926 (LOC100193926), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008673960.2
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1555   UUGUCAUGACUAAAGUAUACU   1575

2.5 PREDICTED: Zea mays uncharacterized LOC100193926 (LOC100193926), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008673962.2
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1534   UUGUCAUGACUAAAGUAUACU   1554

2.5 PREDICTED: Zea mays uncharacterized LOC100193926 (LOC100193926), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008656884.2
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1582   UUGUCAUGACUAAAGUAUACU   1602

2.5 PREDICTED: Zea mays protein binding protein (LOC100285775), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008673963.1
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1431   UUGUCAUGACUAAAGUAUACU   1451

2.5 PREDICTED: Zea mays uncharacterized LOC100193926 (LOC100193926), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008673961.1
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1403   UUGUCAUGACUAAAGUAUACU   1423

2.5 PREDICTED: Zea mays uncharacterized LOC100193926 (LOC100193926), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008656886.2
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1416   UUGUCAUGACUAAAGUAUACU   1436

2.5 PREDICTED: Zea mays protein binding protein (LOC100285775), transcript variant X3, mRNA NA coding protein psRNATarget
BT036314.1
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1505   UUGUCAUGACUAAAGUAUACU   1525

2.5 Zea mays full-length cDNA clone ZM_BFb0106L07 mRNA, complete cds NA coding protein psRNATarget
NM_001138998.1
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1505   UUGUCAUGACUAAAGUAUACU   1525

2.5 Zea mays uncharacterized LOC100193926 (LOC100193926), mRNA NA coding protein psRNATarget
EU961768.1
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1436   UUGUCAUGACUAAAGUAUACU   1456

2.5 Zea mays clone 238154 calcineurin B-like protein 10 mRNA, complete cds NA coding protein psRNATarget
BT036948.1
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1431   UUGUCAUGACUAAAGUAUACU   1451

2.5 Zea mays full-length cDNA clone ZM_BFb0148I02 mRNA, complete cds NA coding protein psRNATarget
EU942479.1
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:1063   UUGUCAUGACUAAAGUAUACU   1083

2.5 Zea mays clone 1508864 mRNA sequence NA coding protein psRNATarget
EZ057512.1
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  |||||||=|||||||||||*|
targets:82   UUGUCAUGACUAAAGUAUAUU   102

2.5 TSA: Zea mays contig58634, mRNA sequence NA coding protein psRNATarget
XM_008663281.1
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  *||||||=|||||||||||*|
targets:3206   AUGUCAUGACUAAAGUAUAUU   3226

2.5 PREDICTED: Zea mays Vacuolar protein-sorting-associated protein 11-like protein (LOC100217064), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001144019.1
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  *||||||=|||||||||||*|
targets:989   AUGUCAUGACUAAAGUAUACU   1009

2.5 Zea mays autophagy-related 12 (Atg12), mRNA NA coding protein psRNATarget
FJ445016.1
ncRNA:21   AACAGUAUUGAUUUCAUAUUA   1
  *||||||=|||||||||||*|
targets:989   AUGUCAUGACUAAAGUAUACU   1009

2.5 Zea mays autophagy-related 12 variant 2 (Atg12) mRNA, complete cds, alternatively spliced NA coding protein psRNATarget
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