| ncRNA ID | osa-miR1850.3 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr5:26275207-26275339 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 40 - CUGUUUAGUUCACAUCAAUCUU - 61 |
| Stem-loop(if miRNA) |
G A C A - U U AU AUGUGAU G GAUG GAUGGAAAGUUGGGAG UUGGGGGAAG UUG GUGUGAACUAAACG GG U ||||||| | |||| |||||||||||||||| |||||||||| ||| |||||||||||||| || G UACACUA C CUAC CUACUUUUCAACCCUU AACCUCCUUC AAC UACACUUGAUUUGU CC G A A A A U - C GG |
| Stem-loop sequence | AUGUGAUGGAGAUGCGAUGGAAAGUUGGGAGAUUGGGGGAAGUUGUGUGUGAACUAAACGUGGAUUGGGGCCCUGUUUAGUUCACAUCAAUCUUCCUCCAAAUUCCCAACUUUUCAUCACAUCACAAUCACAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK242080.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J075137N18, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK242662.1 |
|
3.0 | Oryza sativa Japonica Group cDNA, clone: J090028N21, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK288868.1 |
|
2.0 | Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015781628.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group phytosulfokine receptor 1 (LOC4337367), transcript variant X4, mRNA | phytosulfokine receptor 1(LOC4337367) | coding protein | psRNATarget | |||||||||
| XM_015781627.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group phytosulfokine receptor 1 (LOC4337367), transcript variant X3, mRNA | phytosulfokine receptor 1(LOC4337367) | coding protein | psRNATarget | |||||||||
| XM_015781626.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group phytosulfokine receptor 1 (LOC4337367), transcript variant X2, mRNA | phytosulfokine receptor 1(LOC4337367) | coding protein | psRNATarget | |||||||||
| XM_015781625.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group phytosulfokine receptor 1 (LOC4337367), transcript variant X1, mRNA | phytosulfokine receptor 1(LOC4337367) | coding protein | psRNATarget | |||||||||
| XM_015756139.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group protein GAMETE EXPRESSED 1 (LOC4347181), transcript variant X3, mRNA | protein GAMETE EXPRESSED 1(LOC4347181) | coding protein | psRNATarget | |||||||||
| XM_015756137.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group protein GAMETE EXPRESSED 1 (LOC4347181), transcript variant X1, mRNA | protein GAMETE EXPRESSED 1(LOC4347181) | coding protein | psRNATarget | |||||||||
| XM_015756138.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group protein GAMETE EXPRESSED 1 (LOC4347181), transcript variant X2, mRNA | protein GAMETE EXPRESSED 1(LOC4347181) | coding protein | psRNATarget |
| 1 | PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008). |
| 2 | PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds"; Xue LJ, Zhang JJ, Xue HW; Nucleic Acids Res. 37:916-930(2009). |
| 3 | PMID:19903869
"Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009). |