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BaseInfo

ncRNA ID	novel_zma_miR1768
Species	Zea mays
Class	miRNA
Genome position	Chr5:33623232-33623317 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089713;SRR2089714;SRR2089715;SRR2089698;SRR2089704;SRR2089707
Length	24
Mature sequence(if miRNA)	63 - AUUCAUAUGGAUUGGAGGGGAUUG - 86
Stem-loop(if miRNA)	--              GA    -A UG  --AC  ---A      G   AUUCAUAUGGAUUG  GGGG  U  AU    GG    UUGAGA A   ||||||||||||||  ||||  |  ||    ||    ||||||   UAGGUAUACCUAAC  CCCC  A  UA    CC    AAUUUU G GU              UC    AA GU  GGAA  AUUC      A
Stem-loop sequence	AUUCAUAUGGAUUGGAGGGGAUUGAUACGGAUUGAGAGAGAUUUUAACUUACCAAGGAUUGAAACCCCCUCAAUCCAUAUGGAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008658561.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:302   CAAUCCCCUCCAAUCCAUAUGGAU   325 Target Full Sequence	1.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:1631   CAAUCCCCUCCAAUCCAUAUGGAU   1654 Target Full Sequence	1.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:1981   CAAUCCCCUCCAAUCCAUAUGGAU   2004 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:1981   CAAUCCCCUCCAAUCCAUAUGGAU   2004 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:23   CAAUCCCCUCCAAUCCAUAUGGAU   46 Target Full Sequence	1.5	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:918   CAAUCCCCUCCAAUCCAUAUGGAU   941 Target Full Sequence	1.5	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:846   CAAUCCCCUCCAAUCCAUAUGGAU   869 Target Full Sequence	1.5	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:845   CAAUCCCCUCCAAUCCAUAUGGAU   868 Target Full Sequence	1.5	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:845   CAAUCCCCUCCAAUCCAUAUGGAU   868 Target Full Sequence	1.5	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:847   CAAUCCCCUCCAAUCCAUAUGGAU   870 Target Full Sequence	1.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:899   CAAUCCCCUCCAAUCCAUAUGGAU   922 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:700   CAAUCCCCUCCAAUCCAUAUGGAU   723 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   ||||||||||=||||||||||||| targets:785   CAAUCCCCUCUAAUCCAUAUGAAU   808 Target Full Sequence	1.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||||||||||||||=|| targets:446   CAAUCCCCUCCAAUCCAUAUGGAU   469 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
XM_020545025.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||=|||||||||||||||=|| targets:336   CAAUCUCCUCCAAUCCAUAUGGAU   359 Target Full Sequence	2.5	PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||=|||||||||||=|| targets:977   CAAUCCCCUUCAAUCCAUAUGGAU   1000 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||=|||||||||||=|| targets:1498   CAAUCCCCUUCAAUCCAUAUGGAU   1521 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||=|||||||||||=|| targets:1498   CAAUCCCCUUCAAUCCAUAUGGAU   1521 Target Full Sequence	2.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||=|||||||||||=|| targets:1484   CAAUCCCCUUCAAUCCAUAUGGAU   1507 Target Full Sequence	2.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||=|||||||||||=|| targets:1466   CAAUCCCCUUCAAUCCAUAUGGAU   1489 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||||=|||||||||||=|| targets:1422   CAAUCCCCUUCAAUCCAUAUGGAU   1445 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   =||||||||||||||||||||=|| targets:1199   UAAUCCCCUCCAAUCCAUAUGGAU   1222 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   =||||||||||||||||||||=|| targets:1161   UAAUCCCCUCCAAUCCAUAUGGAU   1184 Target Full Sequence	1.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||=|||||||||||||||=|| targets:1009   CAAUCUCCUCCAAUCCAUAUGGAU   1032 Target Full Sequence	2.5	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||=|||||||||||||=|| targets:837   CAAUCCCUUCCAAUCCAUAUGGAU   860 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
BT055765.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   =||||||=|||||||||||||=|| targets:2322   UAAUCCCUUCCAAUCCAUAUGGAU   2345 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0178P09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153131.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   =||||||=|||||||||||||=|| targets:2322   UAAUCCCUUCCAAUCCAUAUGGAU   2345 Target Full Sequence	2.5	Zea mays putative protein kinase superfamily protein (LOC100280200), mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |=|||||||=|||||||||||=|| targets:1699   CGAUCCCCUUCAAUCCAUAUGGAU   1722 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
BT024027.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   =||||||=|||||||||||||=|| targets:1644   UAAUCCCUUCCAAUCCAUAUGGAU   1667 Target Full Sequence	2.5	Zea mays clone EL01N0420G12 mRNA sequence	NA	coding protein	psRNATarget
EU957719.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   =|||||||||=||||||||||||* targets:2132   UAAUCCCCUCUAAUCCAUAUGAAA   2155 Target Full Sequence	2.0	Zea mays clone 1612818 transport inhibitor response 1 protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154659.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   =|||||||||=||||||||||||* targets:2131   UAAUCCCCUCUAAUCCAUAUGAAA   2154 Target Full Sequence	2.0	Zea mays transport inhibitor response 1 protein (LOC100281739), mRNA	NA	coding protein	psRNATarget
AY110812.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||*=||||||||||||||||||| targets:186   CAAAUCCCUCCAAUCCAUAUGAAU   209 Target Full Sequence	0.0	Zea mays CL13054_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008682725.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   =||||||*||||||||||||||=| targets:358   UAAUCCCAUCCAAUCCAUAUGAGU   381 Target Full Sequence	2.5	PREDICTED: Zea mays Nucleotide/sugar transporter family protein (LOC100191213), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550015.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:4250   CAAUCCCAUCCAAUCCAUAUGUAU   4273 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550018.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:4154   CAAUCCCAUCCAAUCCAUAUGUAU   4177 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020550016.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:3830   CAAUCCCAUCCAAUCCAUAUGUAU   3853 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550019.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:3755   CAAUCCCAUCCAAUCCAUAUGUAU   3778 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020550017.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:3768   CAAUCCCAUCCAAUCCAUAUGUAU   3791 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550020.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:3760   CAAUCCCAUCCAAUCCAUAUGUAU   3783 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020550021.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:3766   CAAUCCCAUCCAAUCCAUAUGUAU   3789 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020550024.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:3712   CAAUCCCAUCCAAUCCAUAUGUAU   3735 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020550022.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:3688   CAAUCCCAUCCAAUCCAUAUGUAU   3711 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   =||||||=*=|||||||||||||| targets:465   UAAUCCCUCUCAAUCCAUAUGAAU   488 Target Full Sequence	3.0	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
HI405822.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:94   CAAUCCCAUCCAAUCCAUAUGUAU   117 Target Full Sequence	2.5	Sequence 3947 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237952.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:94   CAAUCCCAUCCAAUCCAUAUGUAU   117 Target Full Sequence	2.5	Sequence 3947 from Patent EP2985353	NA	coding protein	psRNATarget
JB166283.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:94   CAAUCCCAUCCAAUCCAUAUGUAU   117 Target Full Sequence	2.5	Sequence 3947 from Patent EP2559767	NA	coding protein	psRNATarget
JB166284.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:94   CAAUCCCAUCCAAUCCAUAUGUAU   117 Target Full Sequence	2.5	Sequence 3948 from Patent EP2559767	NA	coding protein	psRNATarget
HI405823.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:94   CAAUCCCAUCCAAUCCAUAUGUAU   117 Target Full Sequence	2.5	Sequence 3948 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237953.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUACUUA   1   |||||||*|||||||||||||*|| targets:94   CAAUCCCAUCCAAUCCAUAUGUAU   117 Target Full Sequence	2.5	Sequence 3948 from Patent EP2985353	NA	coding protein	psRNATarget