Search result

BaseInfo

ncRNA ID novel_zma_miR1762
Species Zea mays
Class miRNA
Genome position Chr5:43226661-43226794 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 1 - GAUUGGGGUAGAACCAAACAAGCC - 24
Stem-loop(if miRNA) -C      C    -AU                      G       UACGGAUUG     GA   UGA  U
  UUUGUU GGUU   UUUUAAUCCAUAUGGAUUGGAG GGAUUGA         GAGGG  UUA   CU A
  |||||| ||||   |||||||||||||||||||||| |||||||         |||||  |||   || C
  GAACAA CCAA   GGGGUUAGGUAUACCUAACUUC CCUAACU         CUCCC  AGU   GG U
CC      A    GAU                      A       ---------     AA   UAG  G
Stem-loop sequence CUUUGUUCGGUUAUUUUUAAUCCAUAUGGAUUGGAGGGGAUUGAUACGGAUUGGAGGGGAUUAUGACUUACUGGGGAUUGAAACCCUCUCAAUCCACUUCAAUCCAUAUGGAUUGGGGUAGAACCAAACAAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ061352.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:108   GGCUUGUUCGGUUCUACCCCAAUC   131

1.0 TSA: Zea mays contig62474, mRNA sequence NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:355   GGCUUGUUCGGUUCUACCCCAAUC   378

1.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
EU972046.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:694   GGCUUGUUCGGUUCUACCCCAAUC   717

1.0 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT062922.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:836   GGCUUGUUCGGUUCUACCCCAAUC   859

1.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959053.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:782   GGCUUGUUCGGUUCUACCCCAAUC   805

1.0 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:782   GGCUUGUUCGGUUCUACCCCAAUC   805

1.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:783   GGCUUGUUCGGUUCUACCCCAAUC   806

1.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU953075.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:919   GGCUUGUUCGGUUCUACCCCAAUC   942

1.0 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
EU961636.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:1039   GGCUUGUUCGGUUCUACCCCAAUC   1062

1.0 Zea mays clone 237217 mRNA sequence NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:855   GGCUUGUUCGGUUCUACCCCAAUC   878

1.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
XM_008672211.2
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:881   GGCUUGUUCGGUUCUACCCCAAUC   904

1.0 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:1900   GGCUUGUUCGGUUCUACCCCAAUC   1923

1.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:1900   GGCUUGUUCGGUUCUACCCCAAUC   1923

1.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_008672210.2
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:1673   GGCUUGUUCGGUUCUACCCCAAUC   1696

1.0 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA NA coding protein psRNATarget
BT055069.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||||||||
targets:887   GGCUUGUUCGGUUCUACCCCAAUC   910

1.0 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
BT064935.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*||||||||=||||||
targets:748   GGCUUGUUCGGUUCUACUCCAAUC   771

2.5 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
EU959055.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*||||*||||||||||
targets:784   GGCUUGUUCGGUUYUACCCCAAUC   807

2.5 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*||||||||||||=||
targets:799   GGCUUGUUCGGUUCUACCCCAGUC   822

2.5 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU965203.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*||||||||||||=||
targets:799   GGCUUGUUCGGUUCUACCCCAGUC   822

2.5 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
EU956568.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|||||||||=|||||
targets:1540   GGCUUGUUCGGUUCUACCUCAAUC   1563

2.5 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
XM_020549355.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|*|||||||||||||
targets:849   GGCUUGUUCGAUUCUACCCCAAUC   872

2.0 PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA NA coding protein psRNATarget
BT064472.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*||||*||||||||||
targets:1341   GGCUUGUUCGGUUAUACCCCAAUC   1364

2.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT040193.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*||||*||||||||||
targets:1385   GGCUUGUUCGGUUAUACCCCAAUC   1408

2.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
AY105910.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*||||*||||||||||
targets:1403   GGCUUGUUCGGUUAUACCCCAAUC   1426

2.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*||||*||||||||||
targets:1417   GGCUUGUUCGGUUAUACCCCAAUC   1440

2.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*||||*||||||||||
targets:1417   GGCUUGUUCGGUUAUACCCCAAUC   1440

2.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*||||*||||||||||
targets:1608   GGCUUGUUCGGUUAUACCCCAAUC   1631

2.5 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
XM_008654469.2
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  ||||||||*|*|||||||||||||
targets:3030   GGCUUGUUCGUUUCUACCCCAAUC   3053

2.0 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
LQ238773.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  *|||||||*|*|||||||||||||
targets:8   AGCUUGUUCGUUUCUACCCCAAUC   31

2.0 Sequence 4768 from Patent EP2985353 NA coding protein psRNATarget
HI406643.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  *|||||||*|*|||||||||||||
targets:8   AGCUUGUUCGUUUCUACCCCAAUC   31

2.0 Sequence 4768 from Patent EP2074227 NA coding protein psRNATarget
JB167104.1
ncRNA:24   CCGAACAAACCAAGAUGGGGUUAG   1
  *|||||||*|*|||||||||||||
targets:8   AGCUUGUUCGUUUCUACCCCAAUC   31

2.0 Sequence 4768 from Patent EP2559767 NA coding protein psRNATarget
XM_008658561.2
ncRNA:24   CC-GAACAAACCAAGAUGGGGUUAG   1
  ||-|*||||*|||||||||=|||||
targets:210   GGUCAUGUUCGGUUCUACCUCAAUC   234

2.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
EZ081763.1
ncRNA:24   CC-GAACAAACCAAGAUGGGGUUAG   1
  ||-|*||||*|||||||||*|||||
targets:44   GGUCAUGUUCGGUUCUACCACAAUC   68

2.5 TSA: Zea mays contig17404, mRNA sequence NA coding protein psRNATarget
EZ068230.1
ncRNA:24   CCGA-ACAAACCAAGAUGGGGUUAG   1
  **||-||||*|||||||*|||||||
targets:29   CACUAUGUUCGGUUCUAGCCCAAUC   53

2.5 TSA: Zea mays contig03865, mRNA sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.