| ncRNA ID | osa-miR1850.2 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr5:26275207-26275339 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 71 - UUGUGUGUGAACUAAACGUGG - 91 |
| Stem-loop(if miRNA) |
G A C A - U U AU AUGUGAU G GAUG GAUGGAAAGUUGGGAG UUGGGGGAAG UUG GUGUGAACUAAACG GG U ||||||| | |||| |||||||||||||||| |||||||||| ||| |||||||||||||| || G UACACUA C CUAC CUACUUUUCAACCCUU AACCUCCUUC AAC UACACUUGAUUUGU CC G A A A A U - C GG |
| Stem-loop sequence | AUGUGAUGGAGAUGCGAUGGAAAGUUGGGAGAUUGGGGGAAGUUGUGUGUGAACUAAACGUGGAUUGGGGCCCUGUUUAGUUCACAUCAAUCUUCCUCCAAAUUCCCAACUUUUCAUCACAUCACAAUCACAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK242080.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J075137N18, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| CT829977.1 |
|
3.0 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN069L13, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK062646.1 |
|
3.0 | Oryza sativa Japonica Group cDNA clone:001-105-E02, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015778624.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group blue copper protein (LOC4326916), mRNA | blue copper protein(LOC4326916) | coding protein | psRNATarget |
| 1 | PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008). |
| 2 | PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds"; Xue LJ, Zhang JJ, Xue HW; Nucleic Acids Res. 37:916-930(2009). |
| 3 | PMID:19903869
"Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009). |