Search result

BaseInfo

ncRNA ID	novel_zma_miR1757
Species	Zea mays
Class	miRNA
Genome position	Chr3:159137174-159137249 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	53 - GAAUUCUAUUUUCCUAAGGGAAAU - 76
Stem-loop(if miRNA)	--    UCU              AAUUAG         UC   GAAU   AUUUUCCUAAGGGA      UUCAUUUUU  U   ||||   ||||||||||||||      |||||||||   CUUG   UAAAAGGGUUCCUU      AAGUAAAAG  U CC    UGU              ----AA         AA
Stem-loop sequence	GAAUUCUAUUUUCCUAAGGGAAAUUAGUUCAUUUUUUCUUAAGAAAAUGAAAAUUCCUUGGGAAAAUUGUGUUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU962589.1	ncRNA:24   UAAAGGGAAUCCUUUUAUCUUAAG   1   ||||=||||=|||||||=|||||| targets:820   AUUUUCCUUGGGAAAAUGGAAUUC   843 Target Full Sequence	2.5	Zea mays clone 244010 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU957492.1	ncRNA:24   UAAAGGGAAUCCUUUUAUCUUAAG   1   |||||||||=|||||||||||*|| targets:1747   AUUUCCCUUGGGAAAAUAGAAAUC   1770 Target Full Sequence	2.5	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
NM_001153204.1	ncRNA:24   UAAAGGGAAUCCUUUUAUCUUAAG   1   ||||==|||||||||||||||*|| targets:1398   AUUUUUCUUAGGAAAAUAGAAAUC   1421 Target Full Sequence	2.5	Zea mays Omega-amidase chloroplastic (LOC100280276), mRNA	NA	coding protein	psRNATarget
BT055900.1	ncRNA:24   UAAAGGGAAUCCUUUUAUCUUAAG   1   ||||==|||||||||||||||*|| targets:1398   AUUUUUCUUAGGAAAAUAGAAAUC   1421 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0026G06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   UAAAGGGAAUCCUUUUAUCUUAAG   1   *|||=||||=|||||||||||*|| targets:805   UUUUUCCUUGGGAAAAUAGAAAUC   828 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008646834.2	ncRNA:24   UAAAGGGAAUCCUUUUAUCUUAAG   1   *|||=||*|||||||||||||*|| targets:4167   UUUUUCCAUAGGAAAAUAGAAAUC   4190 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103626423), mRNA	NA	coding protein	psRNATarget