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BaseInfo

ncRNA ID novel_zma_miR1752
Species Zea mays
Class miRNA
Genome position Chr5:114793604-114793672 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089705
Length 24
Mature sequence(if miRNA) 46 - AUAUGUAUUGAGGUGGAUUAGAGU - 69
Stem-loop(if miRNA) --      A              A      C   
  AUAUGU UUGAGGUGGAUUAG GUGUAA UUAA
  |||||| |||||||||||||| |||||| |||A
  UGUACA AACUCUACCUAAUC UACAUU AAUC
AG      C              G      U   
Stem-loop sequence AUAUGUAUUGAGGUGGAUUAGAGUGUAACUUAAACUAAUUUACAUGCUAAUCCAUCUCAACACAUGUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403492.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||||||||||||||||||||||=|
targets:78   ACUCUAAUCCACCUCAAUACAUGU   101

1.5 Sequence 1617 from Patent EP2074227 NA coding protein psRNATarget
JB163953.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||||||||||||||||||||||=|
targets:78   ACUCUAAUCCACCUCAAUACAUGU   101

1.5 Sequence 1617 from Patent EP2559767 NA coding protein psRNATarget
LQ235622.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||||||||||||||||||||||=|
targets:78   ACUCUAAUCCACCUCAAUACAUGU   101

1.5 Sequence 1617 from Patent EP2985353 NA coding protein psRNATarget
JB163470.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||||||||=|||||||||||||=|
targets:90   ACUCUAAUUCACCUCAAUACAUGU   113

2.5 Sequence 1134 from Patent EP2559767 NA coding protein psRNATarget
LQ235139.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||||||||=|||||||||||||=|
targets:90   ACUCUAAUUCACCUCAAUACAUGU   113

2.5 Sequence 1134 from Patent EP2985353 NA coding protein psRNATarget
HI403009.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||||||||=|||||||||||||=|
targets:90   ACUCUAAUUCACCUCAAUACAUGU   113

2.5 Sequence 1134 from Patent EP2074227 NA coding protein psRNATarget
AY103802.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |||||||||*||=|||||||||||
targets:786   ACUCUAAUCAACUUCAAUACAUAU   809

2.5 Zea mays PCO148457 mRNA sequence NA coding protein psRNATarget
EZ069719.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*|||||||||||||||||||=|
targets:55   ACCCUAAUCCACCUCAAUACAUGU   78

1.5 TSA: Zea mays contig05355, mRNA sequence NA coding protein psRNATarget
HI403138.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |||||||||*||||||||||||=|
targets:63   ACUCUAAUCGACCUCAAUACAUGU   86

2.5 Sequence 1263 from Patent EP2074227 NA coding protein psRNATarget
LQ235268.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |||||||||*||||||||||||=|
targets:63   ACUCUAAUCGACCUCAAUACAUGU   86

2.5 Sequence 1263 from Patent EP2985353 NA coding protein psRNATarget
JB163599.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |||||||||*||||||||||||=|
targets:63   ACUCUAAUCGACCUCAAUACAUGU   86

2.5 Sequence 1263 from Patent EP2559767 NA coding protein psRNATarget
HI402950.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*|||||||||||||||||||=|
targets:62   ACCCUAAUCCACCUCAAUACAUGU   85

1.5 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*|||||||||||||||||||=|
targets:62   ACCCUAAUCCACCUCAAUACAUGU   85

1.5 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
JB163411.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*|||||||||||||||||||=|
targets:62   ACCCUAAUCCACCUCAAUACAUGU   85

1.5 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
BT085111.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |=||*|||||||||||||||||=|
targets:1193   AUUCCAAUCCACCUCAAUACAUGU   1216

1.5 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
AY103846.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*||||||=||||||||||||=|
targets:976   ACCCUAAUCUACCUCAAUACAUGU   999

2.5 Zea mays PCO130752 mRNA sequence NA coding protein psRNATarget
EU962825.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*||||||=||||||||||||=|
targets:956   ACCCUAAUCUACCUCAAUACAUGU   979

2.5 Zea mays clone 245793 mRNA sequence NA coding protein psRNATarget
BT066687.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*||||||=||||||||||||=|
targets:872   ACCCUAAUCUACCUCAAUACAUGU   895

2.5 Zea mays full-length cDNA clone ZM_BFb0047M01 mRNA, complete cds NA coding protein psRNATarget
NM_001175915.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*||||||=||||||||||||=|
targets:872   ACCCUAAUCUACCUCAAUACAUGU   895

2.5 Zea mays U2 small nuclear ribonucleoprotein B'' (LOC100383254), mRNA NA coding protein psRNATarget
EZ108049.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*||||||=||||||||||||=|
targets:265   ACCCUAAUCUACCUCAAUACAUGU   288

2.5 TSA: Zea mays contig43707, mRNA sequence NA coding protein psRNATarget
BT085755.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  *|||-|||||||||||||||||=|
targets:886   CCUC-AAUCCACCUCAAUACAUGU   908

1.5 Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds NA coding protein psRNATarget
NM_001156128.2
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  *|||-|||||||||||||||||=|
targets:886   CCUC-AAUCCACCUCAAUACAUGU   908

1.5 Zea mays protein SFT2 (LOC100283226), mRNA NA coding protein psRNATarget
XM_020537806.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||**|||||||||||||||=||||
targets:5356   ACCAUAAUCCACCUCAAUAUAUAU   5379

1.5 PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020537807.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||**|||||||||||||||=||||
targets:5014   ACCAUAAUCCACCUCAAUAUAUAU   5037

1.5 PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020537805.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||**|||||||||||||||=||||
targets:4990   ACCAUAAUCCACCUCAAUAUAUAU   5013

1.5 PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020537809.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||**|||||||||||||||=||||
targets:4990   ACCAUAAUCCACCUCAAUAUAUAU   5013

1.5 PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020537808.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||**|||||||||||||||=||||
targets:2479   ACCAUAAUCCACCUCAAUAUAUAU   2502

1.5 PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X4, mRNA NA coding protein psRNATarget
EU941642.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  *|||-|||||||||||||||||=|
targets:13   CCUC-AAUCCACCUCAAUACAUGU   35

1.5 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
LQ235359.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  *|||-||||||=||||||||||||
targets:65   CCUC-AAUCCAUCUCAAUACAUAU   87

1.5 Sequence 1354 from Patent EP2985353 NA coding protein psRNATarget
JB163690.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  *|||-||||||=||||||||||||
targets:65   CCUC-AAUCCAUCUCAAUACAUAU   87

1.5 Sequence 1354 from Patent EP2559767 NA coding protein psRNATarget
HI403229.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  *|||-||||||=||||||||||||
targets:65   CCUC-AAUCCAUCUCAAUACAUAU   87

1.5 Sequence 1354 from Patent EP2074227 NA coding protein psRNATarget
JB163427.1
ncRNA:24   UGAG--AUUAGGUGGAGUUAUGUAUA   1
  ||*|--||||||||||||||||||=|
targets:60   ACACCAUAAUCCACCUCAAUACAUGU   85

1.5 Sequence 1091 from Patent EP2559767 NA coding protein psRNATarget
LQ235096.1
ncRNA:24   UGAG--AUUAGGUGGAGUUAUGUAUA   1
  ||*|--||||||||||||||||||=|
targets:60   ACACCAUAAUCCACCUCAAUACAUGU   85

1.5 Sequence 1091 from Patent EP2985353 NA coding protein psRNATarget
HI402966.1
ncRNA:24   UGAG--AUUAGGUGGAGUUAUGUAUA   1
  ||*|--||||||||||||||||||=|
targets:60   ACACCAUAAUCCACCUCAAUACAUGU   85

1.5 Sequence 1091 from Patent EP2074227 NA coding protein psRNATarget
EZ052294.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||||*||||*||=|||||||||||
targets:59   ACUCCAAUCAACUUCAAUACAUAU   82

2.5 TSA: Zea mays contig53415, mRNA sequence NA coding protein psRNATarget
JB163527.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*|*|||||||||||||||||=|
targets:63   ACCCCAAUCCACCUCAAUACAUGU   86

1.5 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
HI403066.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*|*|||||||||||||||||=|
targets:63   ACCCCAAUCCACCUCAAUACAUGU   86

1.5 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*|*|||||||||||||||||=|
targets:63   ACCCCAAUCCACCUCAAUACAUGU   86

1.5 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
EU963895.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |=*|*|||||||||||||||||=|
targets:982   AUCCCAAUCCACCUCAAUACAUGU   1005

1.5 Zea mays clone 273839 protein SFT2 mRNA, complete cds NA coding protein psRNATarget
JB163478.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*|*|||||=|||||||||||=|
targets:63   ACCCCAAUCCGCCUCAAUACAUGU   86

2.5 Sequence 1142 from Patent EP2559767 NA coding protein psRNATarget
HI403017.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*|*|||||=|||||||||||=|
targets:63   ACCCCAAUCCGCCUCAAUACAUGU   86

2.5 Sequence 1142 from Patent EP2074227 NA coding protein psRNATarget
LQ235147.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*|*|||||=|||||||||||=|
targets:63   ACCCCAAUCCGCCUCAAUACAUGU   86

2.5 Sequence 1142 from Patent EP2985353 NA coding protein psRNATarget
JB167199.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |=*|*|||||||||||||||||=|
targets:66   AUCCCAAUCCACCUCAAUACAUGU   89

1.5 Sequence 4863 from Patent EP2559767 NA coding protein psRNATarget
LQ238868.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |=*|*|||||||||||||||||=|
targets:66   AUCCCAAUCCACCUCAAUACAUGU   89

1.5 Sequence 4863 from Patent EP2985353 NA coding protein psRNATarget
HI406738.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |=*|*|||||||||||||||||=|
targets:66   AUCCCAAUCCACCUCAAUACAUGU   89

1.5 Sequence 4863 from Patent EP2074227 NA coding protein psRNATarget
EU961632.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  *|||-|||=||*||||||||||||
targets:1807   CCUC-AAUUCAGCUCAAUACAUAU   1829

2.5 Zea mays clone 237175 ferrochelatase-2 mRNA, complete cds NA coding protein psRNATarget
XM_008672302.2
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||*|-||||||||||||*||||||
targets:2498   ACAC-AAUCCACCUCAACACAUAU   2520

1.5 PREDICTED: Zea mays protein SHORT-ROOT 1 (LOC103647790), mRNA NA coding protein psRNATarget
EU955707.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  ||||-|||||*|||||||*|||||
targets:604   ACUC-AAUCCCCCUCAAUCCAUAU   626

2.5 Zea mays clone 1543022 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
LQ235393.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |=*|*||||||||||||*||||||
targets:64   AUCCCAAUCCACCUCAACACAUAU   87

1.5 Sequence 1388 from Patent EP2985353 NA coding protein psRNATarget
HI403262.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |=*|*||||||||||||*||||||
targets:64   AUCCCAAUCCACCUCAACACAUAU   87

1.5 Sequence 1387 from Patent EP2074227 NA coding protein psRNATarget
JB163723.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |=*|*||||||||||||*||||||
targets:64   AUCCCAAUCCACCUCAACACAUAU   87

1.5 Sequence 1387 from Patent EP2559767 NA coding protein psRNATarget
LQ235392.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |=*|*||||||||||||*||||||
targets:64   AUCCCAAUCCACCUCAACACAUAU   87

1.5 Sequence 1387 from Patent EP2985353 NA coding protein psRNATarget
HI403263.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |=*|*||||||||||||*||||||
targets:64   AUCCCAAUCCACCUCAACACAUAU   87

1.5 Sequence 1388 from Patent EP2074227 NA coding protein psRNATarget
JB163724.1
ncRNA:24   UGAGAUUAGGUGGAGUUAUGUAUA   1
  |=*|*||||||||||||*||||||
targets:64   AUCCCAAUCCACCUCAACACAUAU   87

1.5 Sequence 1388 from Patent EP2559767 NA coding protein psRNATarget
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