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BaseInfo

ncRNA ID	novel_zma_miR1749
Species	Zea mays
Class	miRNA
Genome position	Chr3:161739555-161739668 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR1583941;SRR1583942
Length	23
Mature sequence(if miRNA)	1 - CAAUCAAGCGAUCUGGUGCAUCU - 23
Stem-loop(if miRNA)	--        U                                        UA   U   AUGCACCA AUCGCUUGAUUGCAUGCUUGCACCAGGAUAAGUGAUUGCA  GGA A   |||||||| ||||||||||||||||||||||||||||||||||||||||  ||| U   UACGUGGU UAGCGAACUAACGUACGAACGUGGUCCUAUUCACUAACGU  CCU U UC        C                                        -C   U
Stem-loop sequence	AUGCACCAUAUCGCUUGAUUGCAUGCUUGCACCAGGAUAAGUGAUUGCAUAGGAUAUUUUCCCUGCAAUCACUUAUCCUGGUGCAAGCAUGCAAUCAAGCGAUCUGGUGCAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU954880.1	ncRNA:23   UCUACGUGGUCUAGCGAACUAAC   1   =|||||||||||||||||||||| targets:775   GGAUGCACCAGAUCGCUUGAUUG   797 Target Full Sequence	0.0	Zea mays clone 1489976 ubiquitin-fusion protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661850.2	ncRNA:23   UCUACGUGGUCUAGCGAACUAAC   1   =|||||||||||||||||||||| targets:776   GGAUGCACCAGAUCGCUUGAUUG   798 Target Full Sequence	0.0	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008661851.2	ncRNA:23   UCUACGUGGUCUAGCGAACUAAC   1   =|||||||||||||||||||||| targets:789   GGAUGCACCAGAUCGCUUGAUUG   811 Target Full Sequence	0.0	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020538318.1	ncRNA:23   UCUACGUGGUCUAGCGAACUAAC   1   =|||||||||||||||||||||| targets:169   GGAUGCACCAGAUCGCUUGAUUG   191 Target Full Sequence	0.0	PREDICTED: Zea mays zinc finger CCCH domain-containing protein 45 (LOC103626282), mRNA	NA	coding protein	psRNATarget
XM_008676293.2	ncRNA:23   UCUACGUGGUCUAGCGAACUAAC   1   =|||||||||||||||||||||| targets:1667   GGAUGCACCAGAUCGCUUGAUUG   1689 Target Full Sequence	0.0	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008676292.2	ncRNA:23   UCUACGUGGUCUAGCGAACUAAC   1   =|||||||||||||||||||||| targets:1839   GGAUGCACCAGAUCGCUUGAUUG   1861 Target Full Sequence	0.0	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676294.2	ncRNA:23   UCUACGUGGUCUAGCGAACUAAC   1   =|||||||||||||||||||||| targets:2012   GGAUGCACCAGAUCGCUUGAUUG   2034 Target Full Sequence	0.0	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X8, mRNA	NA	coding protein	psRNATarget
HI403291.1	ncRNA:23   UCUACGUGGUCUAGCGAACUAAC   1   ||||||||||*|||||||||||| targets:169   AGAUGCACCAAAUCGCUUGAUUG   191 Target Full Sequence	1.5	Sequence 1416 from Patent EP2074227	NA	coding protein	psRNATarget
JB163752.1	ncRNA:23   UCUACGUGGUCUAGCGAACUAAC   1   ||||||||||*|||||||||||| targets:169   AGAUGCACCAAAUCGCUUGAUUG   191 Target Full Sequence	1.5	Sequence 1416 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235421.1	ncRNA:23   UCUACGUGGUCUAGCGAACUAAC   1   ||||||||||*|||||||||||| targets:169   AGAUGCACCAAAUCGCUUGAUUG   191 Target Full Sequence	1.5	Sequence 1416 from Patent EP2985353	NA	coding protein	psRNATarget
EU955857.1	ncRNA:23   UCUACGUGGUCUAGCGAACUAAC   1   =|||||=|=|||||||||||||| targets:542   GGAUGCGCUAGAUCGCUUGAUUG   564 Target Full Sequence	2.0	Zea mays clone 1549251 RING zinc finger protein-like mRNA, complete cds	NA	coding protein	psRNATarget
EZ054257.1	ncRNA:23   UCUACGUGGUCUAGCGAACUAAC   1   =|||||||||||||||*|||||| targets:114   GGAUGCACCAGAUCGCGUGAUUG   136 Target Full Sequence	1.5	TSA: Zea mays contig55379, mRNA sequence	NA	coding protein	psRNATarget