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BaseInfo

ncRNA ID	novel_zma_miR1747
Species	Zea mays
Class	miRNA
Genome position	Chr1:283669425-283669486 [-]
Reference genome	RefGen_v4
Source	SRR1583941
Length	24
Mature sequence(if miRNA)	1 - GUUCGGUUACACUAAUCCAGAGGG - 24
Stem-loop(if miRNA)	--            A               U   UUCUGGAUUGGU UAACCGAACAUGCCC C   |||||||||||| |||||||||||||||   GAGACCUAAUCA AUUGGCUUGUAUGGG A GG            C               A
Stem-loop sequence	UUCUGGAUUGGUAUAACCGAACAUGCCCUCAAGGGUAUGUUCGGUUACACUAAUCCAGAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542894.1	ncRNA:24   GGGAGACCUAAUCACAUUGGCUUG   1   =||||||||||=|||||||||||| targets:14   UCCUCUGGAUUGGUGUAACCGAAC   37 Target Full Sequence	1.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:24   GGGAGACCUAAUCACAUUGGCUUG   1   ||=||||||||=|||||||||||| targets:4811   CCUUCUGGAUUGGUGUAACCGAAC   4834 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   GGGAGACCUAAUCACAUUGGCUUG   1   ||=||||||||=|||||||||||| targets:5038   CCUUCUGGAUUGGUGUAACCGAAC   5061 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ093244.1	ncRNA:24   GGGAGACCUAAUCACAUUGGCUUG   1   ||=|=||||||=|||||||||||| targets:80   CCUUUUGGAUUGGUGUAACCGAAC   103 Target Full Sequence	1.5	TSA: Zea mays contig28894, mRNA sequence	NA	coding protein	psRNATarget
JB163489.1	ncRNA:24   GGG-AGACCUAAUCACAUUGGCUUG   1   |||-||||||||=|||||||||||| targets:96   CCCAUCUGGAUUGGUGUAACCGAAC   120 Target Full Sequence	1.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
HI403028.1	ncRNA:24   GGG-AGACCUAAUCACAUUGGCUUG   1   |||-||||||||=|||||||||||| targets:96   CCCAUCUGGAUUGGUGUAACCGAAC   120 Target Full Sequence	1.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:24   GGG-AGACCUAAUCACAUUGGCUUG   1   |||-||||||||=|||||||||||| targets:96   CCCAUCUGGAUUGGUGUAACCGAAC   120 Target Full Sequence	1.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
EU957179.1	ncRNA:24   GGGAGACCUAAUCACAUUGGCUUG   1   ||||||||||*=|||||||||||| targets:1577   CCCUCUGGAUCGGUGUAACCGAAC   1600 Target Full Sequence	2.5	Zea mays clone 1584995 mRNA sequence	NA	coding protein	psRNATarget
EU968801.1	ncRNA:24   GGGAGACCUAAUCACAUUGGCUUG   1   ||=||||*|||=|||||||||||| targets:542   CCUUCUGAAUUGGUGUAACCGAAC   565 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:24   GGGAGACCUAAUCACAUUGGCUUG   1   ||=||||*|||=|||||||||||| targets:542   CCUUCUGAAUUGGUGUAACCGAAC   565 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
BT060810.1	ncRNA:24   GGG--AGACCUAAUCACAUUGGCUUG   1   ||=--||||*|||=|||||||||||| targets:1575   CCUAUUCUGAAUUGGUGUAACCGAAC   1600 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0053C16 mRNA, complete cds	NA	coding protein	psRNATarget
BT042688.1	ncRNA:24   GGG--AGACCUAAUCACAUUGGCUUG   1   ||=--||||*|||=|||||||||||| targets:1676   CCUAUUCUGAAUUGGUGUAACCGAAC   1701 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0008P01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148650.1	ncRNA:24   GGG--AGACCUAAUCACAUUGGCUUG   1   ||=--||||*|||=|||||||||||| targets:1676   CCUAUUCUGAAUUGGUGUAACCGAAC   1701 Target Full Sequence	2.5	Zea mays UDP-glycosyltransferase 75B1 (umc2700), mRNA	NA	coding protein	psRNATarget