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BaseInfo

ncRNA ID novel_zma_miR1743
Species Zea mays
Class miRNA
Genome position Chr5:198879750-198879804 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 1 - AUUGAGUGUGAUUGGAUGGGUUUA - 24
Stem-loop(if miRNA) --GU  UG        G U       CA
    CU  UUCGGUUA C CUUAAUC  U
    ||  |||||||| | |||||||
    GG  AGGUUAGU G GAGUUAG  A
AUUU  GU        - U       UU
Stem-loop sequence GUCUUGUUCGGUUAGCUCUUAAUCCAUAUUGAUUGAGUGUGAUUGGAUGGGUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020549703.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  |||||||||||||||*||||||||
targets:2342   UAAACCCAUCCAAUCUCACUCAAU   2365

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  |||||||||||||||*||||||||
targets:2282   UAAACCCAUCCAAUCUCACUCAAU   2305

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  |||||||||||||||*||||||||
targets:2275   UAAACCCAUCCAAUCUCACUCAAU   2298

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  |||||||||||||||*||||||||
targets:2147   UAAACCCAUCCAAUCUCACUCAAU   2170

1.5 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  |||||||||||||||*||||||||
targets:2146   UAAACCCAUCCAAUCUCACUCAAU   2169

1.5 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
BT063416.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  |||||||||||||||*||||||||
targets:2074   UAAACCCAUCCAAUCUCACUCAAU   2097

1.5 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
BT086633.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  |||||||||||||||*||||||||
targets:449   UAAACCCAUCCAAUCUCACUCAAU   472

1.5 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:5798   CAAACCCAUCCAAUCCCACUCAAU   5821

1.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:1223   CAAACCCAUCCAAUCCCACUCAAU   1246

1.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:1193   CAAACCCAUCCAAUCCCACUCAAU   1216

1.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:1193   CAAACCCAUCCAAUCCCACUCAAU   1216

1.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:1075   CAAACCCAUCCAAUCCCACUCAAU   1098

1.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:1952   CAAACCCAUCCAAUCCCACUCAAU   1975

1.5 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:1952   CAAACCCAUCCAAUCCCACUCAAU   1975

1.5 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:2494   CAAACCCAUCCAAUCCCACUCAAU   2517

1.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:1809   CAAACCCAUCCAAUCCCACUCAAU   1832

1.5 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:1809   CAAACCCAUCCAAUCCCACUCAAU   1832

1.5 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:1524   CAAACCCAUCCAAUCCCACUCAAU   1547

1.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:1524   CAAACCCAUCCAAUCCCACUCAAU   1547

1.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
BT043378.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:1460   CAAACCCAUCCAAUCCCACUCAAU   1483

1.5 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
NM_001148918.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:1460   CAAACCCAUCCAAUCCCACUCAAU   1483

1.5 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT069115.2
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:522   CAAACCCAUCCAAUCCCACUCAAU   545

1.5 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
BT085319.2
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:170   CAAACCCAUCCAAUCCCACUCAAU   193

1.5 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:868   CAAACCCAUCCAAUCCCACUCAAU   891

1.5 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
EU951448.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:739   CAAACCCAUCCAAUCCCACUCAAU   762

1.5 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
LQ235135.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:92   CAAACCCAUCCAAUCCCACUCAAU   115

1.5 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
HI403094.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:92   CAAACCCAUCCAAUCCCACUCAAU   115

1.5 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
JB163555.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:92   CAAACCCAUCCAAUCCCACUCAAU   115

1.5 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:92   CAAACCCAUCCAAUCCCACUCAAU   115

1.5 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163466.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:92   CAAACCCAUCCAAUCCCACUCAAU   115

1.5 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
HI403005.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:92   CAAACCCAUCCAAUCCCACUCAAU   115

1.5 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:83   CAAACCCAUCCAAUCCCACUCAAU   106

1.5 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
JB166302.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:83   CAAACCCAUCCAAUCCCACUCAAU   106

1.5 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
HI405841.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:83   CAAACCCAUCCAAUCCCACUCAAU   106

1.5 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:73   CAAACCCAUCCAAUCCCACUCAAU   96

1.5 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
HI405893.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:73   CAAACCCAUCCAAUCUCACUCAAU   96

1.5 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
JB166354.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:73   CAAACCCAUCCAAUCUCACUCAAU   96

1.5 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
LQ238023.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:73   CAAACCCAUCCAAUCUCACUCAAU   96

1.5 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
HI405889.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:73   CAAACCCAUCCAAUCCCACUCAAU   96

1.5 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||||||||||||*||||||||
targets:73   CAAACCCAUCCAAUCCCACUCAAU   96

1.5 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||=|||||||||*||||||||
targets:2205   CAAACUCAUCCAAUCCCACUCAAU   2228

2.5 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
BT062183.2
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||=|||||||||*||||||||
targets:240   CAAACUCAUCCAAUCUCACUCAAU   263

2.5 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
EZ064016.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||=|||||||||*||||||||
targets:114   CAAACUCAUCCAAUCCCACUCAAU   137

2.5 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
HI405877.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||=|||||||||*||||||||
targets:81   CAAACUCAUCCAAUCUCACUCAAU   104

2.5 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
JB166338.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||=|||||||||*||||||||
targets:81   CAAACUCAUCCAAUCUCACUCAAU   104

2.5 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
LQ238007.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||=|||||||||*||||||||
targets:81   CAAACUCAUCCAAUCUCACUCAAU   104

2.5 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||=|||||||||*||||||||
targets:74   CAAACUCAUCCAAUCCCACUCAAU   97

2.5 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
JB166363.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||=|||||||||*||||||||
targets:74   CAAACUCAUCCAAUCCCACUCAAU   97

2.5 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
HI405902.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||=|||||||||*||||||||
targets:74   CAAACUCAUCCAAUCCCACUCAAU   97

2.5 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
EZ092645.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||=|||||||||*||||||||
targets:10   CAAACUCAUCCAAUCUCACUCAAU   33

2.5 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
EZ064093.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  ||||||||*||||||*||||||||
targets:182   UAAACCCACCCAAUCCCACUCAAU   205

2.5 TSA: Zea mays contig65216, mRNA sequence NA coding protein psRNATarget
BT069961.2
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *||||*|||||||||*||||||||
targets:104   CAAACACAUCCAAUCCCACUCAAU   127

2.5 Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds NA coding protein psRNATarget
LQ235220.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *|||||*||||||||*||||||||
targets:92   CAAACCAAUCCAAUCCCACUCAAU   115

2.5 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
JB163551.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *|||||*||||||||*||||||||
targets:92   CAAACCAAUCCAAUCCCACUCAAU   115

2.5 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
HI403090.1
ncRNA:24   AUUUGGGUAGGUUAGUGUGAGUUA   1
  *|||||*||||||||*||||||||
targets:92   CAAACCAAUCCAAUCCCACUCAAU   115

2.5 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
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