ncRNA ID | osa-miR1851 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr5:26049315-26049785 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 439 - CGUCUGGGAUGGCAUUUUGGC - 459 |
Stem-loop(if miRNA) |
-   A                         A  A        A  ---  C            A                      U             -GCU  -    ---        G   CCGCACGGGCAGCGGAGCCCGCGGCGCAGUGGCGACUCUUCGGUUGACGGCGGCUGGCUACGCGGUGGCAACGAGGAGGCGGCGGCGGCCAGGAGCUGCUCCACCGGCCCCACG  CAG GUGUCUUCGCCAAAAUGCCAUCCCG AC GAAAUGCC CU   UC UCUUCUUCCUCC UCCUGCGCGUGAAGAGCUCGCC GCGGCCAUGGCUA    CC CUCC   CUGCCAUC CCG                                                                                                                  C  ||| ||||||||||||||||||||||||| || |||||||| ||   || |||||||||||| |||||||||||||||||||||| |||||||||||||    || ||||   |||||||| |||  GUC CACAGAAGCGGUUUUACGGUAGGGU UG CUUUACGG GA   AG AGAAGAAGGAGG AGGGCGCGCACUUCUCGAGCGG CGCCGGUACCGGU    GU GCGG   GGCUACGG CGG                                                                                                                  G G   -                         C  C        G  CCG  A            C                      C             AGAG  G    CGC        -   AACGGCUGCCGCUAGCCCCGCGACGGGAGGGACGGUAGGGGCGGUUGCGGACACGUCGACUCCAGCAGCGCCUUCCUGAGGCCGCUGCUGCGCGCCUAGGGCGGCCGCGCGCAC |
Stem-loop sequence | CAGAGUGUCUUCGCCAAAAUGCCAUCCCGAACAGAAAUGCCACUUCCUCUUCUUCCUCCAUCCUGCGCGUGAAGAGCUCGCCUGCGGCCAUGGCUAGCUCCCUCCCUGCCAUCGCCGCCGCACGGGCAGCGGAGCCCGCGGCGCAGUGGCGACUCUUCGGUUGACGGCGGCUGGCUACGCGGUGGCAACGAGGAGGCGGCGGCGGCCAGGAGCUGCUCCACCGGCCCCACGCGCACGCGCGCCGGCGGGAUCCGCGCGUCGUCGCCGGAGUCCUUCCGCGACGACCUCAGCUGCACAGGCGUUGGCGGGGAUGGCAGGGAGGGCAGCGCCCCGAUCGCCGUCGGCAAGGCGGCAUCGGCGCGGCGGUGGAGAUGGCCAUGGCCGCCGGCGAGCUCUUCACGCGCGGGACGGAGGAAGAAGAAGAGCCAGGGGCAUUUCCGUCUGGGAUGGCAUUUUGGCGAAGACACCUGG |
1 | PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008). |