Search result

BaseInfo

ncRNA ID osa-miR1851
Species Oryza sativa
Class miRNA
Genome position Chr5:26049315-26049785 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 439 - CGUCUGGGAUGGCAUUUUGGC - 459
Stem-loop(if miRNA) -   A                         A  A        A  ---  C            A                      U             -GCU  -    ---        G   CCGCACGGGCAGCGGAGCCCGCGGCGCAGUGGCGACUCUUCGGUUGACGGCGGCUGGCUACGCGGUGGCAACGAGGAGGCGGCGGCGGCCAGGAGCUGCUCCACCGGCCCCACG
 CAG GUGUCUUCGCCAAAAUGCCAUCCCG AC GAAAUGCC CU   UC UCUUCUUCCUCC UCCUGCGCGUGAAGAGCUCGCC GCGGCCAUGGCUA    CC CUCC   CUGCCAUC CCG                                                                                                                  C
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 GUC CACAGAAGCGGUUUUACGGUAGGGU UG CUUUACGG GA   AG AGAAGAAGGAGG AGGGCGCGCACUUCUCGAGCGG CGCCGGUACCGGU    GU GCGG   GGCUACGG CGG                                                                                                                  G
G   -                         C  C        G  CCG  A            C                      C             AGAG  G    CGC        -   AACGGCUGCCGCUAGCCCCGCGACGGGAGGGACGGUAGGGGCGGUUGCGGACACGUCGACUCCAGCAGCGCCUUCCUGAGGCCGCUGCUGCGCGCCUAGGGCGGCCGCGCGCAC
Stem-loop sequence CAGAGUGUCUUCGCCAAAAUGCCAUCCCGAACAGAAAUGCCACUUCCUCUUCUUCCUCCAUCCUGCGCGUGAAGAGCUCGCCUGCGGCCAUGGCUAGCUCCCUCCCUGCCAUCGCCGCCGCACGGGCAGCGGAGCCCGCGGCGCAGUGGCGACUCUUCGGUUGACGGCGGCUGGCUACGCGGUGGCAACGAGGAGGCGGCGGCGGCCAGGAGCUGCUCCACCGGCCCCACGCGCACGCGCGCCGGCGGGAUCCGCGCGUCGUCGCCGGAGUCCUUCCGCGACGACCUCAGCUGCACAGGCGUUGGCGGGGAUGGCAGGGAGGGCAGCGCCCCGAUCGCCGUCGGCAAGGCGGCAUCGGCGCGGCGGUGGAGAUGGCCAUGGCCGCCGGCGAGCUCUUCACGCGCGGGACGGAGGAAGAAGAAGAGCCAGGGGCAUUUCCGUCUGGGAUGGCAUUUUGGCGAAGACACCUGG

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).