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BaseInfo

ncRNA ID	novel_zma_miR1734
Species	Zea mays
Class	miRNA
Genome position	Chr5:220205503-220205586 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089698
Length	21
Mature sequence(if miRNA)	1 - CGAAGGGGAUUGGAGGGGCUA - 21
Stem-loop(if miRNA)	--    GGG                              CAA   CGAA   GAUUGGAGGGGCUAGAAUCCCUUUCUUAUU   A   ||||   ||||||||||||||||||||||||||||||   GCUU   CUAACCUCCCUGAUCUUAGGGAAAGAAUAA   A UG    ACA                              AUU
Stem-loop sequence	CGAAGGGGAUUGGAGGGGCUAGAAUCCCUUUCUUAUUCAAAAUUAAAUAAGAAAGGGAUUCUAGUCCCUCCAAUCACAUUCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539411.1	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   ||||||||||||||||||*|| targets:3500   UAGCCCCUCCAAUCCCCUCCG   3520 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   ||||||||||||||||||*|| targets:3535   UAGCCCCUCCAAUCCCCUCCG   3555 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   *|*|=|||||||||||||||| targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	2.0	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   *|*|=|||||||||||||||| targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	2.0	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
JB166408.1	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   *|*|=|||||||||||||||| targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	2.0	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
HI405947.1	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   *|*|=|||||||||||||||| targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	2.0	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
JB166405.1	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   *|*|=|||||||||||||||| targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	2.0	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
HI405944.1	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   *|*|=|||||||||||||||| targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	2.0	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
BT017268.1	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   *|*||||||||||||||||=| targets:911   CAUCCCCUCCAAUCCCCUUUG   931 Target Full Sequence	2.5	Zea mays clone EL01N0312A05.c mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   ||*|||||||||||||||*|| targets:684   UAUCCCCUCCAAUCCCCUCCG   704 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   ||*|||||||||||||||*|| targets:1031   UAACCCCUCCAAUCCCCUCCG   1051 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   ||*|||||||||||||||*|| targets:1564   UAUCCCCUCCAAUCCCCUCCG   1584 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   ||*|||||||||||||||*|| targets:1584   UAUCCCCUCCAAUCCCCUCCG   1604 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   ||*|||||||||||||||*|| targets:1608   UAUCCCCUCCAAUCCCCUCCG   1628 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   ||*|||||||||||||||*|| targets:1641   UAUCCCCUCCAAUCCCCUCCG   1661 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:21   AUCGGGGAGGUUAGGGGAAGC   1   |**||=||||||||||||||* targets:56   UUUCCUCUCCAAUCCCCUUCA   76 Target Full Sequence	3.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget