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BaseInfo

ncRNA ID	novel_zma_miR1733
Species	Zea mays
Class	miRNA
Genome position	Chr5:20580772-20580910 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR5100248
Length	24
Mature sequence(if miRNA)	1 - UUAGGGCUGAUUUGGUGGUAAGGG - 24
Stem-loop(if miRNA)	--     -                                        A  A    UA    CA     A   UUAGG GCUGAUUUGGUGGUAAGGGAUCCCAAGGGGAUCCAUGGGG AG AAUU  CUUG  AUUCA U   ||||| |||||||||||||||||||||||||||||||||||||||| || ||||  ||||  |||||   GAUUC CGACUAAACCACCAUUCCCUAGGGUUCCCCUAGGUACCCC UC UUAG  GAAC  UAAGU U GA     A                                        C  C    GG    AA     U
Stem-loop sequence	UUAGGGCUGAUUUGGUGGUAAGGGAUCCCAAGGGGAUCCAUGGGGAAGAAAUUUACUUGCAAUUCAAUUUUGAAUAACAAGGGGAUUCCUCCCCCAUGGAUCCCCUUGGGAUCCCUUACCACCAAAUCAGCACUUAGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001175907.1	ncRNA:24   GGGAAUGGUGGUUUAGUCGGGAUU   1   ||||*||||||||||||||||||| targets:1341   CCCUAACCACCAAAUCAGCCCUAA   1364 Target Full Sequence	0.0	Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA	NA	coding protein	psRNATarget
BT066676.1	ncRNA:24   GGGAAUGGUGGUUUAGUCGGGAUU   1   ||||*||||||||||||||||||| targets:1341   CCCUAACCACCAAAUCAGCCCUAA   1364 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   GG-GAAUGGUGGUUUAGUCGGGAUU   1   ||-|||==||||||||||||||||| targets:163   CCACUUGUCACCAAAUCAGCCCUAA   187 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   GG-GAAUGGUGGUUUAGUCGGGAUU   1   ||-|||==||||||||||||||||| targets:163   CCACUUGUCACCAAAUCAGCCCUAA   187 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   GG-GAAUGGUGGUUUAGUCGGGAUU   1   ||-|||==||||||||||||||||| targets:163   CCACUUGUCACCAAAUCAGCCCUAA   187 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
HI403301.1	ncRNA:24   GGGAAUGGUGGUUUAGUCGGGAUU   1   ||||*==||||||||||||||||| targets:98   CCCUGGUCACCAAAUCAGCCCUAA   121 Target Full Sequence	2.0	Sequence 1426 from Patent EP2074227	NA	coding protein	psRNATarget
JB163762.1	ncRNA:24   GGGAAUGGUGGUUUAGUCGGGAUU   1   ||||*==||||||||||||||||| targets:98   CCCUGGUCACCAAAUCAGCCCUAA   121 Target Full Sequence	2.0	Sequence 1426 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235431.1	ncRNA:24   GGGAAUGGUGGUUUAGUCGGGAUU   1   ||||*==||||||||||||||||| targets:98   CCCUGGUCACCAAAUCAGCCCUAA   121 Target Full Sequence	2.0	Sequence 1426 from Patent EP2985353	NA	coding protein	psRNATarget
EU941266.1	ncRNA:24   GGGAAUGGUGGUUUAGUCGGGAUU   1   ||||*|=||=|||||||||||||| targets:688   CCCUAAUCAUCAAAUCAGCCCUAA   711 Target Full Sequence	2.0	Zea mays clone 1435213 mRNA sequence	NA	coding protein	psRNATarget
NM_001147318.1	ncRNA:24   GG-GAAUGGUGGUUUAGUCGGGAUU   1   ||-||||=||||||||||*|||||| targets:1655   CCACUUAUCACCAAAUCAACCCUAA   1679 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272865 (LOC100272865), mRNA	NA	coding protein	psRNATarget
BT039623.1	ncRNA:24   GG-GAAUGGUGGUUUAGUCGGGAUU   1   ||-||||=||||||||||*|||||| targets:1655   CCACUUAUCACCAAAUCAACCCUAA   1679 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035A18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020537910.1	ncRNA:24   GG-GAAUGGUGGUUUAGUCGGGAUU   1   ||-||||=||||||||||*|||||| targets:1763   CCACUUAUCACCAAAUCAACCCUAA   1787 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome P450 87A3-like (LOC109939182), mRNA	NA	coding protein	psRNATarget
EU950017.1	ncRNA:24   GGGAAUGGUGGUUUAGUCGGGAUU   1   |||**==||||||||||||||||| targets:514   CCCGGGUCACCAAAUCAGCCCUAA   537 Target Full Sequence	2.0	Zea mays clone 457681 mRNA sequence	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   GGGAAUGGUGGUUUAGUCGGGAUU   1   |||**|=||||||||||||=|||| targets:1495   CCCGAAUCACCAAAUCAGCUCUAA   1518 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   GGGAAUGGUGGUUUAGUCGGGAUU   1   |||**==||||||||||||||||| targets:1879   CCCGGGUCACCAAAUCAGCCCUAA   1902 Target Full Sequence	2.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   GGGAAUGGUGGUUUAGUCGGGAUU   1   |||**==||||||||||||||||| targets:2317   CCCGGGUCACCAAAUCAGCCCUAA   2340 Target Full Sequence	2.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671854.2	ncRNA:24   GGGAAUGGUGGUUUAGUCGGGAUU   1   |||**==||||||||||||||||| targets:72   CCCCGGUCACCAAAUCAGCCCUAA   95 Target Full Sequence	2.0	PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA	NA	coding protein	psRNATarget