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BaseInfo

ncRNA ID	novel_zma_miR1730
Species	Zea mays
Class	miRNA
Genome position	Chr5:217619889-217619967 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	21
Mature sequence(if miRNA)	1 - CGGAGGGGAUUGAAGGGGCUA - 21
Stem-loop(if miRNA)	--        A   A            - CC      AAA   CGGAGGGG UUG AGGGGCUAAAAU C  CUUAUU   A   |||||||| ||| |||||||||||| |  ||||||   GCCUCCCC AAC UCCCCGAUUUUA G  GAAUAA   A UG        C   C            A AA      AUA
Stem-loop sequence	CGGAGGGGAUUGAAGGGGCUAAAAUCCCCUUAUUAAAAAAUAAAUAAGAAGAAUUUUAGCCCCUCCAACCCCCUCCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654495.2	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   ||||||||||||||||||||| targets:1113   UAGCCCCUUCAAUCCCCUCCG   1133 Target Full Sequence	0.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   ||||*|=|||||||||||||* targets:1325   UAGCACUUUCAAUCCCCUCCA   1345 Target Full Sequence	3.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
HI406069.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   |||||||||||||||=||||* targets:86   UAGCCCCUUCAAUCCUCUCCA   106 Target Full Sequence	2.5	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   |||||||||||||||=||||* targets:86   UAGCCCCUUCAAUCCUCUCCA   106 Target Full Sequence	2.5	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
JB166530.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   |||||||||||||||=||||* targets:86   UAGCCCCUUCAAUCCUCUCCA   106 Target Full Sequence	2.5	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
BT036654.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   |||||||||||||||=||||* targets:1039   UAGCCCCUUCAAUCCUCUCCA   1059 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   |||||||||||||||=||||* targets:872   UAGCCCCUUCAAUCCUCUCCA   892 Target Full Sequence	2.5	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   |||||||||||||||=||||* targets:872   UAGCCCCUUCAAUCCUCUCCA   892 Target Full Sequence	2.5	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   ||||||||*|||||||||||| targets:3500   UAGCCCCUCCAAUCCCCUCCG   3520 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   ||||||||*|||||||||||| targets:3535   UAGCCCCUCCAAUCCCCUCCG   3555 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   |||||||*||||||||||||* targets:8   UAGCCCCCUCAAUCCCCUCCA   28 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   ||*|||||*|||||||||||| targets:684   UAUCCCCUCCAAUCCCCUCCG   704 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   ||*|||||*|||||||||||| targets:1031   UAACCCCUCCAAUCCCCUCCG   1051 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   ||||=||*||||||||||||* targets:1672   UAGCUCCCUCAAUCCCCUCCA   1692 Target Full Sequence	3.0	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   ||*|||||*|||||||||||| targets:1564   UAUCCCCUCCAAUCCCCUCCG   1584 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   ||*|||||*|||||||||||| targets:1584   UAUCCCCUCCAAUCCCCUCCG   1604 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   ||*|||||*|||||||||||| targets:1608   UAUCCCCUCCAAUCCCCUCCG   1628 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   ||*|||||*|||||||||||| targets:1641   UAUCCCCUCCAAUCCCCUCCG   1661 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AY108800.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   *|||||=*||||||||||||* targets:780   CAGCCCUCUCAAUCCCCUCCA   800 Target Full Sequence	3.0	Zea mays PCO127746 mRNA sequence	NA	coding protein	psRNATarget
EU947467.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   *|*||=||||||||||||||* targets:1298   AAACCUCUUCAAUCCCCUCCU   1318 Target Full Sequence	3.0	Zea mays clone 343885 mRNA sequence	NA	coding protein	psRNATarget
XM_008645760.2	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   *|||||=*||||||||||||* targets:1467   CAGCCCUCUCAAUCCCCUCCA   1487 Target Full Sequence	3.0	PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase 2 (pco127746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001323405.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   *|*||=||||||||||||||* targets:2001   AAACCUCUUCAAUCCCCUCCU   2021 Target Full Sequence	3.0	Zea mays SKP1-interacting partner 15-like (LOC103648491), transcript variant 1, mRNA	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   *|*||||*||||||||||||| targets:3173   GAUCCCCCUCAAUCCCCUCCG   3193 Target Full Sequence	2.0	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:21   AUCGGGGAAGUUAGGGGAGGC   1   |**||||*||||||||||||| targets:2148   UUUCCCCCUCAAUCCCCUCCG   2168 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget