| ncRNA ID | osa-miR5825 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr5:23591556-23591787 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 11 - AAAACAUCUGAUAACCUGAAACGG - 34 |
| Stem-loop(if miRNA) |
CU -CUA A AU C A C C C --AU - UU UAUAUACCAAAUUAGUUUUAUGAAAUCAAUAGCUGAAUA GUG CC CGUUUUA GGUUAU GA GUUUU A UUUGGUUAAAA CAAACUA UUCAA UU AAC AGUU U ||| || ||||||| |||||| || ||||| | ||||||||||| ||||||| ||||| || ||| |||| A CAC GG GCAAAGU CCAAUA CU CAAAA U AAACCAGUUUU GUUUGAU AAGUU CA CUU UUGU U CU CUGG - GU A C A A U CAAA U -- UAUUAUUAUAAAAGUUGAGUUGUAUUUAAAUAAUAUUUU |
| Stem-loop sequence | GUGCUCCCUACGUUUUAAGGUUAUAUGACGUUUUAACUUUGGUUAAAACCAAACUACUUCAAAUUUAACUUAGUUUAUAUACCAAAUUAGUUUUAUGAAAUCAAUAGCUGAAUAUAUUUUUAUAAUAAAUUUAUGUUGAGUUGAAAAUAUUAUUAUUGUUUUCUACAAACUUGAAUUAGUUUGAUUUUGACCAAAAUCAAAACAUCUGAUAACCUGAAACGGGUCGGUCCAC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK288928.1 |
|
1.5 | Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK288635.1 |
|
1.5 | Oryza sativa Japonica Group cDNA, clone: J090055J05, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015773578.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group putative F-box protein At2g02030 (LOC9271925), transcript variant X3, mRNA | putative F-box protein At2g02030(LOC9271925) | coding protein | psRNATarget | |||||||||
| AK069379.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J023015H09, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |