Search result

BaseInfo

ncRNA ID	ath-miRf10025-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - AAGAAGACUCUGAAGCUUGU - NA
Stem-loop(if miRNA)	GG    G   AU    --            UC    UU UG     G G   UCGA UGA  AGCU  GGAGUCUUCUUU  UUCC  G  CUCGA U U   |||| |||  ||||  ||||||||||||  ||||  |  ||||| |   AGCU ACU  UCGA  UCUCAGAAGAAG  AAGG  C  GAGUU A C UG    -   GU    AG            -U    -- GU     G U
Stem-loop sequence	GGUCGAGUGAAUAGCUGGAGUCUUCUUUUCUUCCUUGUGCUCGAGUGUCUAGUUGAGUGCGGAAUGAAGAAGACUCUGAAGCUUGUCAUCGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183194.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   |||||||||||||*|||||| targets:631   ACAAGCUUCAGAGCCUUCUU   650 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   |||||||||||||*|||||| targets:982   ACAAGCUUCAGAGCCUUCUU   1001 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   |||||||||||||*|||||| targets:1791   ACAAGCUUCAGAGCCUUCUU   1810 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   =|*||||||||||||||||* targets:397   GCCAGCUUCAGAGUCUUCUC   416 Target Full Sequence	2.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   =|*||||||||||||||||* targets:762   GCUAGCUUCAGAGUCUUCUC   781 Target Full Sequence	2.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   =|*||||||||||||||||* targets:1089   GCUAGCUUCAGAGUCUUCUC   1108 Target Full Sequence	2.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   =|*||||||||||||||||* targets:1137   GCUAGCUUCAGAGUCUUCUC   1156 Target Full Sequence	2.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
AF004214.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   =*||||||||||||=||||| targets:1567   GAAAGCUUCAGAGUUUUCUU   1586 Target Full Sequence	2.5	Arabidopsis thaliana ethylene-insensitive3-like2 (EIL2) mRNA, complete cds	NA	coding protein	psRNATarget
NM_122120.2	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   =*||||||||||||=||||| targets:1567   GAAAGCUUCAGAGUUUUCUU   1586 Target Full Sequence	2.5	Arabidopsis thaliana ETHYLENE-INSENSITIVE3-like 2 (EIL2), mRNA	ETHYLENE-INSENSITIVE3-like 2(EIL2)	coding protein	psRNATarget
NM_001343698.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   =*||||||||||||=||||| targets:1599   GAAAGCUUCAGAGUUUUCUU   1618 Target Full Sequence	2.5	Arabidopsis thaliana ETHYLENE-INSENSITIVE3-like 2 (EIL2), mRNA	ETHYLENE-INSENSITIVE3-like 2(EIL2)	coding protein	psRNATarget
NM_001343697.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   =*||||||||||||=||||| targets:1650   GAAAGCUUCAGAGUUUUCUU   1669 Target Full Sequence	2.5	Arabidopsis thaliana ETHYLENE-INSENSITIVE3-like 2 (EIL2), mRNA	ETHYLENE-INSENSITIVE3-like 2(EIL2)	coding protein	psRNATarget
AK117687.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   **|||||||||||*|||||| targets:159   UGAAGCUUCAGAGACUUCUU   178 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL17-34-N18	NA	coding protein	psRNATarget
AK228698.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   =*|||||||||||*|||||| targets:1700   GAAAGCUUCAGAGACUUCUU   1719 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for putative kinesin heavy chain, complete cds, clone: RAFL16-05-D14	NA	coding protein	psRNATarget
NM_179950.3	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   =*|||||||||||*|||||| targets:1820   GAAAGCUUCAGAGACUUCUU   1839 Target Full Sequence	2.5	Arabidopsis thaliana ATP binding microtubule motor family protein mRNA	ATP binding microtubule motor family protein(AT2G37420)	coding protein	psRNATarget
NM_001336659.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   =*|||||||||||*|||||| targets:1838   GAAAGCUUCAGAGACUUCUU   1857 Target Full Sequence	2.5	Arabidopsis thaliana ATP binding microtubule motor family protein mRNA	ATP binding microtubule motor family protein(AT2G37420)	coding protein	psRNATarget
AY093222.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   ||=*|=|||||||||||||| targets:132   ACGCGUUUCAGAGUCUUCUU   151 Target Full Sequence	3.0	Arabidopsis thaliana similar to Ac transposase (At1g15300) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   =|*|||*||||||||||||* targets:742   GCCAGCYUCAGAGUCUUCUC   761 Target Full Sequence	3.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BX827515.1	ncRNA:20   UGUUCGAAGUCUCAGAAGAA   1   |*|*|=|||||||||||||| targets:304   AGAUGUUUCAGAGUCUUCUU   323 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS68ZE03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget