| ncRNA ID | ath-miR830-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr1:4820355-4820549 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 119 - UCUUCUCCAAAUAGUUUAGGUU - 140 |
| Stem-loop(if miRNA) |
----------------CA - G A -- CUUUACUAAACACAAAAUCUGUAAACGCCUCGAUCUCCUCUUCUCCAAAUAGUUUAGGUUAGCUGACAUA GAGU CUC CU GU GU U |||| ||| || || || UUCG GAG GG UU AC A GCUACAAGAAGUUUUAAG U A A GA AUUAGCGAGAAGCAAGUGAAGAAGAGUUUUAUCAAUCCAAUAGACCUCUUUGACCCCAGAUAACUUAAUA |
| Stem-loop sequence | CAGAGUCUCGCUAGUGUCUUUACUAAACACAAAAUCUGUAAACGCCUCGAUCUCCUCUUCUCCAAAUAGUUUAGGUUAGCUGACAUAUAAUAAUUCAAUAGACCCCAGUUUCUCCAGAUAACCUAACUAUUUUGAGAAGAAGUGAACGAAGAGCGAUUACAAGUUAGGAGAGUGCUUGAAUUUUGAAGAACAUCG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK221156.1 |
|
2.0 | Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL22-95-C22 | NA | coding protein | psRNATarget | |||||||||
| AY140094.1 |
|
2.0 | Arabidopsis thaliana unknown protein mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| AY037180.1 |
|
2.0 | Arabidopsis thaliana At1g52380/F19K6_4 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_104116.4 |
|
2.0 | Arabidopsis thaliana NUP50 (Nucleoporin 50 kDa) protein mRNA | NUP50 (Nucleoporin 50 kDa) protein(AT1G52380) | coding protein | psRNATarget | |||||||||
| NM_001333541.1 |
|
2.0 | Arabidopsis thaliana NUP50 (Nucleoporin 50 kDa) protein mRNA | NUP50 (Nucleoporin 50 kDa) protein(AT1G52380) | coding protein | psRNATarget | |||||||||
| NM_001333543.1 |
|
2.0 | Arabidopsis thaliana NUP50 (Nucleoporin 50 kDa) protein mRNA | NUP50 (Nucleoporin 50 kDa) protein(AT1G52380) | coding protein | psRNATarget | |||||||||
| NM_001333542.1 |
|
2.0 | Arabidopsis thaliana NUP50 (Nucleoporin 50 kDa) protein mRNA | NUP50 (Nucleoporin 50 kDa) protein(AT1G52380) | coding protein | psRNATarget | |||||||||
| NM_001203088.2 |
|
2.5 | Arabidopsis thaliana P-loop containing nucleoside triphosphate hydrolases superfamily protein mRNA | P-loop containing nucleoside triphosphate hydrolases superfamily protein(AT3G45850) | coding protein | psRNATarget | |||||||||
| NM_114454.3 |
|
2.5 | Arabidopsis thaliana P-loop containing nucleoside triphosphate hydrolases superfamily protein mRNA | P-loop containing nucleoside triphosphate hydrolases superfamily protein(AT3G45850) | coding protein | psRNATarget | |||||||||
| NM_119819.1 |
|
2.5 | Arabidopsis thaliana transmembrane protein partial mRNA | transmembrane protein(AT4G36560) | coding protein | psRNATarget |
| 1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 2 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
| 3 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |