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BaseInfo

ncRNA ID	novel_zma_miR1728
Species	Zea mays
Class	miRNA
Genome position	Chr5:194360338-194360428 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	1 - AGGAUUGGAGGGGAUUGAGGGGGU - 24
Stem-loop(if miRNA)	--A               -    GG            U      AG    GGAUUGGAGGGGAUU GAGG  GUUAAAUCCCUU CUAUUC  U    ||||||||||||||| ||||  |||||||||||| ||||||    CCUAACUUCCCUUAA CUCC  UAAUUUAGGGAA GAUAAG  U CCA               U    UU            C      UU
Stem-loop sequence	AGGAUUGGAGGGGAUUGAGGGGGUUAAAUCCCUUUCUAUUCAGUUUUGAAUAGCAAGGGAUUUAAUUUCCUCUAAUUCCCUUCAAUCCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403493.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||||||||||||||||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	0.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||||||||||||||||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	0.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||||||||||||||||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	0.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *|||||||||||||||||=||||| targets:2150   UCCCCCUCAAUCCCCUCCGAUCCU   2173 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *=|=|||||||||||||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	0.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *=|=|||||||||||||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	0.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *=|=|||||||||||||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	0.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||||||=||||||||=||||||| targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||||||=||||||||=||||||| targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||||||=||||||||=||||||| targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||||||=||||||||=||||||| targets:821   UCCCCCUUAAUCCCCUUCAAUCCU   844 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||||||=||||||||=||||||| targets:860   UCCCCCUUAAUCCCCUUCAAUCCU   883 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||||||=||||||||=||||||| targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||||||=||||||||=||||||| targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *|=|=||||||||||||||||||| targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   =||||||||||||||||||=|||* targets:10   GCCCCCUCAAUCCCCUCCAGUCCC   33 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
JB163479.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||==|||||||||||||=||||| targets:54   UCCUUCUCAAUCCCCUCCGAUCCU   77 Target Full Sequence	1.5	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||==|||||||||||||=||||| targets:54   UCCUUCUCAAUCCCCUCCGAUCCU   77 Target Full Sequence	1.5	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
HI403018.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||==|||||||||||||=||||| targets:54   UCCUUCUCAAUCCCCUCCGAUCCU   77 Target Full Sequence	1.5	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *==||||=|||||||||||||||| targets:77   UUUCCCUUAAUCCCCUCCAAUCCU   100 Target Full Sequence	1.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||||||||||||||||=|||||* targets:1798   UCCCCCUCAAUCCCCUCUAAUCCC   1821 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *|||||||||||||||||=||||* targets:3175   UCCCCCUCAAUCCCCUCCGAUCCC   3198 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *|=|||||||||||||=||||||* targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *|=|||||||||||||=||||||* targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *|=|||||||||||||=||||||* targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *=|*|||||||||||||||||||| targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98 Target Full Sequence	0.0	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *=|*|||||||||||||||||||| targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64 Target Full Sequence	0.0	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020549567.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   |*|||||||||||||||=|||||* targets:1067   AGCCCCUCAAUCCCCUCUAAUCCC   1090 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545025.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||||*|||||||=||||||||||* targets:329   ACCCACUCAAUCUCCUCCAAUCCA   352 Target Full Sequence	2.5	PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   =|*|==|||||||||||||||*|| targets:1327   GCACUUUCAAUCCCCUCCAAUACU   1350 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
AY108800.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   =|||=||||||||||||||*|||* targets:782   GCCCUCUCAAUCCCCUCCAUUCCA   805 Target Full Sequence	2.5	Zea mays PCO127746 mRNA sequence	NA	coding protein	psRNATarget
XM_008645760.2	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   =|||=||||||||||||||*|||* targets:1469   GCCCUCUCAAUCCCCUCCAUUCCA   1492 Target Full Sequence	2.5	PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase 2 (pco127746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *|=|*||||||||||||||||||* targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	1.0	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *|=|*||||||||||||||||||* targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	1.0	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *|=|*||||||||||||||||||* targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	1.0	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001349063.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUU-AGGA   1   *==|=|||||||||||||||-|||| targets:1644   UUUCUCUCAAUCCCCUCCAACUCCU   1668 Target Full Sequence	3.0	Zea mays Electron carrier/ iron ion binding protein (cl22526_1), mRNA	NA	coding protein	psRNATarget
BT064254.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUU-AGGA   1   *==|=|||||||||||||||-|||| targets:1644   UUUCUCUCAAUCCCCUCCAACUCCU   1668 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0153A19 mRNA, complete cds	NA	coding protein	psRNATarget
BT067571.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUU-AGGA   1   *==|=|||||||||||||||-|||| targets:1631   UUUCUCUCAAUCCCCUCCAACUCCU   1655 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0088A12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649902.2	ncRNA:24   UGGGGGAGUUAGGGGAGGUU-AGGA   1   *==|=|||||||||||||||-|||| targets:1674   UUUCUCUCAAUCCCCUCCAACUCCU   1698 Target Full Sequence	3.0	PREDICTED: Zea mays Electron carrier/ iron ion binding protein (cl22526_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406437.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||||*|*||||||||||||||||* targets:68   ACCCACCCAAUCCCCUCCAAUCCA   91 Target Full Sequence	2.0	Sequence 4562 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238567.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||||*|*||||||||||||||||* targets:68   ACCCACCCAAUCCCCUCCAAUCCA   91 Target Full Sequence	2.0	Sequence 4562 from Patent EP2985353	NA	coding protein	psRNATarget
JB166898.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||||*|*||||||||||||||||* targets:68   ACCCACCCAAUCCCCUCCAAUCCA   91 Target Full Sequence	2.0	Sequence 4562 from Patent EP2559767	NA	coding protein	psRNATarget
HI406133.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||*|||||||||* targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238263.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||*|||||||||* targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2985353	NA	coding protein	psRNATarget
JB166594.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||*|||||||||* targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2559767	NA	coding protein	psRNATarget
JB167414.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||||*||||||||*|||||||||* targets:5   ACCCACUCAAUCCACUCCAAUCCA   28 Target Full Sequence	2.5	Sequence 5078 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239083.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||||*||||||||*|||||||||* targets:5   ACCCACUCAAUCCACUCCAAUCCA   28 Target Full Sequence	2.5	Sequence 5078 from Patent EP2985353	NA	coding protein	psRNATarget
HI406953.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||||*||||||||*|||||||||* targets:5   ACCCACUCAAUCCACUCCAAUCCA   28 Target Full Sequence	2.5	Sequence 5078 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||*|||||||||=|||||||||* targets:2429   UCCACCUCAAUCCUCUCCAAUCCC   2452 Target Full Sequence	2.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
EU943240.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||*|||||||||* targets:573   ACCACCUCAAUCCACUCCAAUCCA   596 Target Full Sequence	2.5	Zea mays clone 1589496 mRNA sequence	NA	coding protein	psRNATarget
BT055408.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||||*||||||||*|||||||||* targets:811   ACCCACUCAAUCCACUCCAAUCCA   834 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152975.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||||*||||||||*|||||||||* targets:811   ACCCACUCAAUCCACUCCAAUCCA   834 Target Full Sequence	2.5	Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA	NA	coding protein	psRNATarget
EU965489.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||*|||||||||* targets:1111   ACCACCUCAAUCCACUCCAAUCCA   1134 Target Full Sequence	2.5	Zea mays clone 286392 mRNA sequence	NA	coding protein	psRNATarget
XM_008649521.2	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||||*||||||||*|||||||||* targets:863   ACCCACUCAAUCCACUCCAAUCCA   886 Target Full Sequence	2.5	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649520.2	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||||*||||||||*|||||||||* targets:892   ACCCACUCAAUCCACUCCAAUCCA   915 Target Full Sequence	2.5	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667020.2	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||*|||||||||* targets:2080   ACCACCUCAAUCCACUCCAAUCCA   2103 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA	NA	coding protein	psRNATarget
NM_001176906.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||=|*|||||||||||||||*||* targets:256   ACUCACUCAAUCCCCUCCAACCCA   279 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384359 (LOC100384359), mRNA	NA	coding protein	psRNATarget
BT069908.1	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   ||=|*|||||||||||||||*||* targets:256   ACUCACUCAAUCCCCUCCAACCCA   279 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0320O20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666284.2	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||*|=||||||||*||||||||| targets:3281   UCCACUUCAAUCCCAUCCAAUCCU   3304 Target Full Sequence	2.5	PREDICTED: Zea mays protein indeterminate-domain 16 (LOC103643131), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666283.2	ncRNA:24   UGGGGGAGUUAGGGGAGGUUAGGA   1   *||*|=||||||||*||||||||| targets:3364   UCCACUUCAAUCCCAUCCAAUCCU   3387 Target Full Sequence	2.5	PREDICTED: Zea mays protein indeterminate-domain 16 (LOC103643131), transcript variant X1, mRNA	NA	coding protein	psRNATarget