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BaseInfo

ncRNA ID	novel_zma_miR1719
Species	Zea mays
Class	miRNA
Genome position	Chr5:10559639-10559747 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2287031;SRR2287160;SRR2287163;SRR2287164;SRR5451006;SRR2089698;SRR2089699;SRR2089702;SRR2089703
Length	24
Mature sequence(if miRNA)	86 - ACUGAAAUGGAAUAAAGUGGAGGG - 109
Stem-loop(if miRNA)	--                      C C       C      UA          C   CUCCAUUUUAUUCCAUUUUAGU C UAAAUUA UAAAUA  GAAACUAAAA U   |||||||||||||||||||||| | ||||||| ||||||  |||||||||| C   GAGGUGAAAUAAGGUAAAGUCA G AUUUAAU AUUUAU  CUUUGAUUUU U GG                      A U       A      UC          A
Stem-loop sequence	CUCCAUUUUAUUCCAUUUUAGUCCCUAAAUUACUAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCCUUAUUUAAUAAUUUAUGAACUGAAAUGGAAUAAAGUGGAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019141.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |||||||=||||||||||||=||| targets:297   CCCUCCAUUUUAUUCCAUUUUAGU   320 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |=||||||||||||||||||=||| targets:1129   CUCUCCACUUUAUUCCAUUUUAGU   1152 Target Full Sequence	1.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |=||||||||||||||||||=||| targets:1129   CUCUCCACUUUAUUCCAUUUUAGU   1152 Target Full Sequence	1.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |||||||=||||||||||||=||| targets:172   CCCUCCAUUUUAUUCCAUUUUAGU   195 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |||||||=||||||||||||=||| targets:172   CCCUCCAUUUUAUUCCAUUUUAGU   195 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |||||||=||||||||||||=||| targets:172   CCCUCCAUUUUAUUCCAUUUUAGU   195 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |||||||=||||||||||||=||| targets:81   CCCUCCAUUUUAUUCCAUUUUAGU   104 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |||||||=||||||||||||=||| targets:81   CCCUCCAUUUUAUUCCAUUUUAGU   104 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |||||||=||||||||||||=||| targets:81   CCCUCCAUUUUAUUCCAUUUUAGU   104 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |=|||||=||||||||||||=||| targets:2154   CUCUCCAUUUUAUUCCAUUUUAGU   2177 Target Full Sequence	2.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   ||||=||=||||||||||||=||| targets:2102   CCCUUCAUUUUAUUCCAUUUUAGU   2125 Target Full Sequence	2.5	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
BT063047.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   ||||=||=||||||||||||=||| targets:2102   CCCUUCAUUUUAUUCCAUUUUAGU   2125 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   ||||=||=||||||||||||=||| targets:32   CCCUUCAUUUUAUUCCAUUUUAGU   55 Target Full Sequence	2.5	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   ||||=||=||||||||||||=||| targets:32   CCCUUCAUUUUAUUCCAUUUUAGU   55 Target Full Sequence	2.5	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   ||||=||=||||||||||||=||| targets:32   CCCUUCAUUUUAUUCCAUUUUAGU   55 Target Full Sequence	2.5	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |||||||*||||||||||||=||| targets:146   CCCUCCAAUUUAUUCCAUUUUAGU   169 Target Full Sequence	2.5	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   ||||*||=||||||||||||=||| targets:1002   CCCUACAUUUUAUUCCAUUUUAGU   1025 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |=||*||=||||||||||||=||| targets:845   CUCUACAUUUUAUUCCAUUUUAGU   868 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   |=||*||=||||||||||||=||| targets:845   CUCUACAUUUUAUUCCAUUUUAGU   868 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   =|||*||=||||||||||||=||| targets:582   UCCUACAUUUUAUUCCAUUUUAGU   605 Target Full Sequence	2.5	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403449.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |||||||||||||||||=||| targets:1   UCCACUUUAUUCCAUUUUAGU   21 Target Full Sequence	1.5	Sequence 1574 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235466.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |||||||||||||||||=||| targets:1   UCCACUUUAUUCCAUUUUAGU   21 Target Full Sequence	1.5	Sequence 1461 from Patent EP2985353	NA	coding protein	psRNATarget
JB163910.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |||||||||||||||||=||| targets:1   UCCACUUUAUUCCAUUUUAGU   21 Target Full Sequence	1.5	Sequence 1574 from Patent EP2559767	NA	coding protein	psRNATarget
HI403268.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |||||||||||||||||=||| targets:1   UCCACUUUAUUCCAUUUUAGU   21 Target Full Sequence	1.5	Sequence 1393 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235579.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |||||||||||||||||=||| targets:1   UCCACUUUAUUCCAUUUUAGU   21 Target Full Sequence	1.5	Sequence 1574 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235398.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |||||||||||||||||=||| targets:1   UCCACUUUAUUCCAUUUUAGU   21 Target Full Sequence	1.5	Sequence 1393 from Patent EP2985353	NA	coding protein	psRNATarget
HI403336.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |||||||||||||||||=||| targets:1   UCCACUUUAUUCCAUUUUAGU   21 Target Full Sequence	1.5	Sequence 1461 from Patent EP2074227	NA	coding protein	psRNATarget
JB163797.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |||||||||||||||||=||| targets:1   UCCACUUUAUUCCAUUUUAGU   21 Target Full Sequence	1.5	Sequence 1461 from Patent EP2559767	NA	coding protein	psRNATarget
JB163729.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |||||||||||||||||=||| targets:1   UCCACUUUAUUCCAUUUUAGU   21 Target Full Sequence	1.5	Sequence 1393 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235183.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   =||*=||=||||||||||||=||| targets:33   UCCAUCAUUUUAUUCCAUUUUAGU   56 Target Full Sequence	2.5	Sequence 1178 from Patent EP2985353	NA	coding protein	psRNATarget
JB163514.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   =||*=||=||||||||||||=||| targets:33   UCCAUCAUUUUAUUCCAUUUUAGU   56 Target Full Sequence	2.5	Sequence 1178 from Patent EP2559767	NA	coding protein	psRNATarget
HI403053.1	ncRNA:24   GGGAGGUGAAAUAAGGUAAAGUCA   1   =||*=||=||||||||||||=||| targets:33   UCCAUCAUUUUAUUCCAUUUUAGU   56 Target Full Sequence	2.5	Sequence 1178 from Patent EP2074227	NA	coding protein	psRNATarget
HI403270.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1395 from Patent EP2074227	NA	coding protein	psRNATarget
JB163859.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||=||||||||||||||=||| targets:1   UCUACUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1523 from Patent EP2559767	NA	coding protein	psRNATarget
JB163731.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1395 from Patent EP2559767	NA	coding protein	psRNATarget
JB163821.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1485 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235400.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1395 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235439.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1434 from Patent EP2985353	NA	coding protein	psRNATarget
JB163770.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1434 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235528.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||=||||||||||||||=||| targets:1   UCUACUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1523 from Patent EP2985353	NA	coding protein	psRNATarget
HI403398.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||=||||||||||||||=||| targets:1   UCUACUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1523 from Patent EP2074227	NA	coding protein	psRNATarget
HI403360.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1485 from Patent EP2074227	NA	coding protein	psRNATarget
HI403309.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1434 from Patent EP2074227	NA	coding protein	psRNATarget
JB163880.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1544 from Patent EP2559767	NA	coding protein	psRNATarget
HI403419.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1544 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235549.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1544 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235490.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1485 from Patent EP2985353	NA	coding protein	psRNATarget
JB163726.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1390 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235395.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1390 from Patent EP2985353	NA	coding protein	psRNATarget
HI403265.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1390 from Patent EP2074227	NA	coding protein	psRNATarget
JB163903.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1567 from Patent EP2559767	NA	coding protein	psRNATarget
JB163878.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1542 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235572.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1567 from Patent EP2985353	NA	coding protein	psRNATarget
HI403442.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1567 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235547.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1542 from Patent EP2985353	NA	coding protein	psRNATarget
HI403417.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   ||||=||||||||||||=||| targets:1   UCCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1542 from Patent EP2074227	NA	coding protein	psRNATarget
JB163892.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |=||=||||||||||||=||| targets:1   UUCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1556 from Patent EP2559767	NA	coding protein	psRNATarget
HI403391.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |=||=||||||||||||=||| targets:1   UUCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1516 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235561.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |=||=||||||||||||=||| targets:1   UUCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1556 from Patent EP2985353	NA	coding protein	psRNATarget
JB163852.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |=||=||||||||||||=||| targets:1   UUCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1516 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235521.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |=||=||||||||||||=||| targets:1   UUCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1516 from Patent EP2985353	NA	coding protein	psRNATarget
HI403431.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |=||=||||||||||||=||| targets:1   UUCAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1556 from Patent EP2074227	NA	coding protein	psRNATarget
HI403338.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |||||||*|||||||||=||| targets:1   UCCACUUAAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1463 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235468.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |||||||*|||||||||=||| targets:1   UCCACUUAAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1463 from Patent EP2985353	NA	coding protein	psRNATarget
JB163799.1	ncRNA:21   AGGUGAAAUAAGGUAAAGUCA   1   |||||||*|||||||||=||| targets:1   UCCACUUAAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1463 from Patent EP2559767	NA	coding protein	psRNATarget