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BaseInfo

ncRNA ID	novel_zma_miR1717
Species	Zea mays
Class	miRNA
Genome position	Chr4:10215917-10216038 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR2089714;SRR2089715;SRR2287162;SRR2287165;SRR2089700;SRR2089701;SRR2089706
Length	21
Mature sequence(if miRNA)	102 - UUUGUGGGGGGCUGCAAACAU - 122
Stem-loop(if miRNA)	--                         G       CACCCAUAGCAGCAAUAACACAACUAAAA   UAUCUGA   GUUUGCAGUCCCUCACAAAAAGGAA AUAGACC                             CAU       U   ||||||||||||||||||||||||| |||||||                             |||       G   CAAACGUCGGGGGGUGUUUUUUCUU UAUCUGG                             UGG       G UA                         A       ---------------------------AA   ACAUCCA
Stem-loop sequence	GUUUGCAGUCCCUCACAAAAAGGAAGAUAGACCCACCCAUAGCAGCAAUAACACAACUAAAACAUUAUCUGAUGGACCUACAGGUAAGGUCUAUAUUCUUUUUUGUGGGGGGCUGCAAACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403218.1	ncRNA:21   UACAAACGUCGGGGGGUGUUU   1   *|||||||||||||=|||||| targets:11   CUGUUUGCAGCCCCUCACAAA   31 Target Full Sequence	1.5	Sequence 1343 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235358.1	ncRNA:21   UACAAACGUCGGGGGGUGUUU   1   *|||||||||||||=|||||| targets:11   CUGUUUGCAGCCCCUCACAAA   31 Target Full Sequence	1.5	Sequence 1353 from Patent EP2985353	NA	coding protein	psRNATarget
HI403228.1	ncRNA:21   UACAAACGUCGGGGGGUGUUU   1   *|||||||||||||=|||||| targets:11   CUGUUUGCAGCCCCUCACAAA   31 Target Full Sequence	1.5	Sequence 1353 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235348.1	ncRNA:21   UACAAACGUCGGGGGGUGUUU   1   *|||||||||||||=|||||| targets:11   CUGUUUGCAGCCCCUCACAAA   31 Target Full Sequence	1.5	Sequence 1343 from Patent EP2985353	NA	coding protein	psRNATarget
JB163689.1	ncRNA:21   UACAAACGUCGGGGGGUGUUU   1   *|||||||||||||=|||||| targets:11   CUGUUUGCAGCCCCUCACAAA   31 Target Full Sequence	1.5	Sequence 1353 from Patent EP2559767	NA	coding protein	psRNATarget
JB163679.1	ncRNA:21   UACAAACGUCGGGGGGUGUUU   1   *|||||||||||||=|||||| targets:11   CUGUUUGCAGCCCCUCACAAA   31 Target Full Sequence	1.5	Sequence 1343 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008653247.2	ncRNA:21   UACAAACGUCGGGGGGUGUUU   1   *|||||||||||||=|||||| targets:26   CUGUUUGCAGCCCCUCACAAA   46 Target Full Sequence	1.5	PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA	NA	coding protein	psRNATarget
XM_020547144.1	ncRNA:21   UACAAACGUCGGGGGGUGUUU   1   *|||||||||||||=|||||| targets:143   CUGUUUGCAGCCCCUCACAAA   163 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103636662 (LOC103636662), mRNA	NA	coding protein	psRNATarget
XM_020545800.1	ncRNA:21   UACAAACGUCGGGGGGUGUUU   1   **||||||||||||=|||||| targets:871   CCGUUUGCAGCCCCUCACAAA   891 Target Full Sequence	1.5	PREDICTED: Zea mays embryo sac development arrest 6 (LOC103641842), mRNA	NA	coding protein	psRNATarget
X55314.1	ncRNA:21   UACAAACGUCGGGGGGUGUUU   1   **||||||||||||=|||||| targets:913   UGGUUUGCAGCCCCUCACAAA   933 Target Full Sequence	1.5	Zea mays A2 gene	NA	coding protein	psRNATarget