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BaseInfo

ncRNA ID novel_zma_miR1714
Species Zea mays
Class miRNA
Genome position Chr4:77147010-77147072 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2089715;SRR2089698;SRR2089701;SRR2089705;SRR2089706;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - UGUGUUGAGGUGGAUUAGGGUGUA - 24
Stem-loop(if miRNA) --         G      AG       C   
  UGUGUUGAG UGGAUU  GGUGUAA UUAA
  ||||||||| ||||||  ||||||| |||A
  ACAUAACUC AUUUAA  CCACAUU AAUU
GU         G      CA       U   
Stem-loop sequence UGUGUUGAGGUGGAUUAGGGUGUAACUUAAAUUAAUUUACACCACAAUUUAGCUCAAUACAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163411.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||||||||||||||||||=|||
targets:59   UACACCCUAAUCCACCUCAAUACA   82

1.5 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||||||||||||||||||=|||
targets:59   UACACCCUAAUCCACCUCAAUACA   82

1.5 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
HI402950.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||||||||||||||||||=|||
targets:59   UACACCCUAAUCCACCUCAAUACA   82

1.5 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
EZ069719.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||||||||||||||||||=|||
targets:52   UACACCCUAAUCCACCUCAAUACA   75

1.5 TSA: Zea mays contig05355, mRNA sequence NA coding protein psRNATarget
JB163953.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||=||||||||||||||=|||
targets:75   UACACUCUAAUCCACCUCAAUACA   98

2.5 Sequence 1617 from Patent EP2559767 NA coding protein psRNATarget
HI403492.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||=||||||||||||||=|||
targets:75   UACACUCUAAUCCACCUCAAUACA   98

2.5 Sequence 1617 from Patent EP2074227 NA coding protein psRNATarget
LQ235622.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||=||||||||||||||=|||
targets:75   UACACUCUAAUCCACCUCAAUACA   98

2.5 Sequence 1617 from Patent EP2985353 NA coding protein psRNATarget
AY110392.1
ncRNA:24   AUGUGGGA-UUAGGUGGAGUUGUGU   1
  ||||||||-||||||||||||||||
targets:150   UACACCCUCAAUCCACCUCAACACA   174

2.0 Zea mays CL7038_2 mRNA sequence NA coding protein psRNATarget
LQ235616.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||=|*||||||||||||||||
targets:57   UACACUCAAAUCCACCUCAACACA   80

2.0 Sequence 1611 from Patent EP2985353 NA coding protein psRNATarget
HI403486.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||=|*||||||||||||||||
targets:57   UACACUCAAAUCCACCUCAACACA   80

2.0 Sequence 1611 from Patent EP2074227 NA coding protein psRNATarget
JB163947.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||=|*||||||||||||||||
targets:57   UACACUCAAAUCCACCUCAACACA   80

2.0 Sequence 1611 from Patent EP2559767 NA coding protein psRNATarget
HI402966.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||||*|||||||||||||=|||
targets:59   UACACCAUAAUCCACCUCAAUACA   82

2.5 Sequence 1091 from Patent EP2074227 NA coding protein psRNATarget
JB163427.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||||*|||||||||||||=|||
targets:59   UACACCAUAAUCCACCUCAAUACA   82

2.5 Sequence 1091 from Patent EP2559767 NA coding protein psRNATarget
LQ235096.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||||*|||||||||||||=|||
targets:59   UACACCAUAAUCCACCUCAAUACA   82

2.5 Sequence 1091 from Patent EP2985353 NA coding protein psRNATarget
LQ235585.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||*=|||||||||||||||||
targets:59   UACACAUUAAUCCACCUCAACACA   82

2.0 Sequence 1580 from Patent EP2985353 NA coding protein psRNATarget
HI403455.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||*=|||||||||||||||||
targets:59   UACACAUUAAUCCACCUCAACACA   82

2.0 Sequence 1580 from Patent EP2074227 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||||*||||||||||||=|||
targets:60   UACACCCCAAUCCACCUCAAUACA   83

2.5 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
HI403066.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||||*||||||||||||=|||
targets:60   UACACCCCAAUCCACCUCAAUACA   83

2.5 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
JB163527.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||||*||||||||||||=|||
targets:60   UACACCCCAAUCCACCUCAAUACA   83

2.5 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
JB163916.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||*=|||||||||||||||||
targets:59   UACACAUUAAUCCACCUCAACACA   82

2.0 Sequence 1580 from Patent EP2559767 NA coding protein psRNATarget
LQ235393.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||=||*||||||||||||||||
targets:61   UACAUCCCAAUCCACCUCAACACA   84

1.0 Sequence 1388 from Patent EP2985353 NA coding protein psRNATarget
HI403262.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||=||*||||||||||||||||
targets:61   UACAUCCCAAUCCACCUCAACACA   84

1.0 Sequence 1387 from Patent EP2074227 NA coding protein psRNATarget
JB163724.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||=||*||||||||||||||||
targets:61   UACAUCCCAAUCCACCUCAACACA   84

1.0 Sequence 1388 from Patent EP2559767 NA coding protein psRNATarget
JB163723.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||=||*||||||||||||||||
targets:61   UACAUCCCAAUCCACCUCAACACA   84

1.0 Sequence 1387 from Patent EP2559767 NA coding protein psRNATarget
LQ235392.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||=||*||||||||||||||||
targets:61   UACAUCCCAAUCCACCUCAACACA   84

1.0 Sequence 1387 from Patent EP2985353 NA coding protein psRNATarget
HI403263.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||=||*||||||||||||||||
targets:61   UACAUCCCAAUCCACCUCAACACA   84

1.0 Sequence 1388 from Patent EP2074227 NA coding protein psRNATarget
LQ239362.1
ncRNA:24   AUG--UGGGAUUAGGUGGAGUUGUGU   1
  ||=--|||=|||||||||||||=|||
targets:20   UAUUAACCUUAAUCCACCUCAAUACA   45

2.5 Sequence 5357 from Patent EP2985353 NA coding protein psRNATarget
JB167693.1
ncRNA:24   AUG--UGGGAUUAGGUGGAGUUGUGU   1
  ||=--|||=|||||||||||||=|||
targets:20   UAUUAACCUUAAUCCACCUCAAUACA   45

2.5 Sequence 5357 from Patent EP2559767 NA coding protein psRNATarget
HI407232.1
ncRNA:24   AUG--UGGGAUUAGGUGGAGUUGUGU   1
  ||=--|||=|||||||||||||=|||
targets:20   UAUUAACCUUAAUCCACCUCAAUACA   45

2.5 Sequence 5357 from Patent EP2074227 NA coding protein psRNATarget
EU963469.1
ncRNA:24   AUG--UGGGAUUAGGUGGAGUUGUGU   1
  ||=--|||=|||||||||||||=|||
targets:970   UAUUAACCUUAAUCCACCUCAAUACA   995

2.5 Zea mays clone 263014 mRNA sequence NA coding protein psRNATarget
BT053958.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||*||||||||*|||||||||
targets:1446   UACACACUAAUCCAACUCAACACA   1469

2.5 Zea mays full-length cDNA clone ZM_BFc0073M17 mRNA, complete cds NA coding protein psRNATarget
BT066939.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||*||||||||*|||||||||
targets:1520   UACACACUAAUCCAACUCAACACA   1543

2.5 Zea mays full-length cDNA clone ZM_BFb0114E07 mRNA, complete cds NA coding protein psRNATarget
BT055962.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||*||||||||*|||||||||
targets:1652   UACACACUAAUCCAACUCAACACA   1675

2.5 Zea mays full-length cDNA clone ZM_BFc0070E08 mRNA, complete cds NA coding protein psRNATarget
NM_001153225.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||*||||||||*|||||||||
targets:1652   UACACACUAAUCCAACUCAACACA   1675

2.5 Zea mays choline/ethanolamine kinase (LOC100280298), mRNA NA coding protein psRNATarget
EU962737.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||*||||||||*|||||||||
targets:1673   UACACACUAAUCCAACUCAACACA   1696

2.5 Zea mays clone 245096 mRNA sequence NA coding protein psRNATarget
XM_020547679.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||*||||||||*|||||||||
targets:1694   UACACACUAAUCCAACUCAACACA   1717

2.5 PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547680.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  |||||*||||||||*|||||||||
targets:1707   UACACACUAAUCCAACUCAACACA   1730

2.5 PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X2, mRNA NA coding protein psRNATarget
LQ235328.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||*|=*||||||||||||||||
targets:61   UACAACUCAAUCCACCUCAACACA   84

2.0 Sequence 1323 from Patent EP2985353 NA coding protein psRNATarget
JB163659.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||*|=*||||||||||||||||
targets:61   UACAACUCAAUCCACCUCAACACA   84

2.0 Sequence 1323 from Patent EP2559767 NA coding protein psRNATarget
HI403198.1
ncRNA:24   AUGUGGGAUUAGGUGGAGUUGUGU   1
  ||||*|=*||||||||||||||||
targets:61   UACAACUCAAUCCACCUCAACACA   84

2.0 Sequence 1323 from Patent EP2074227 NA coding protein psRNATarget
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