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BaseInfo

ncRNA ID novel_zma_miR1713
Species Zea mays
Class miRNA
Genome position Chr4:7292755-7292831 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2287031;SRR2287159;SRR2287160;SRR2287161;SRR2287162;SRR2287164;SRR2287165;SRR5451003;SRR5451004;SRR5451005;SRR5451006;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089702;SRR2089703;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 54 - GUUAAAGAGUAGAAUAGAGCGGAU - 77
Stem-loop(if miRNA) ---             G     -          --C   A
   CGUUCUAUUCUAU UUUUG CCAAAUAGAA   AGA U
   ||||||||||||| ||||| ||||||||||   ||| C
   GCGAGAUAAGAUG GAAAU GGUUUGUUUU   UCU A
UAG             A     U          UUA   C
Stem-loop sequence CGUUCUAUUCUAUGUUUUGCCAAAUAGAACAGAAUCACUCUAUUUUUUGUUUGGUUAAAGAGUAGAAUAGAGCGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU945197.1
ncRNA:24   UAGGCGAGAUAAGAUGAGAAAUUG   1
  *|||||||||||||||||||*|||
targets:105   CUCCGCUCUAUUCUACUCUUCAAC   128

1.5 Zea mays clone 244184 mRNA sequence NA coding protein psRNATarget
BT084215.2
ncRNA:24   UAGGCGAGAUAAGAUGAGAAAUUG   1
  *|||*|||||||||||||||*|||
targets:1037   CUCCACUCUAUUCUACUCUUCAAC   1060

1.5 Zea mays full-length cDNA clone ZM_BFb0090B20 mRNA, complete cds NA coding protein psRNATarget