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BaseInfo

ncRNA ID	novel_zma_miR1712
Species	Zea mays
Class	miRNA
Genome position	Chr4:71987139-71987250 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	1 - AAGUGAGGAGUGAAAAGAAGAUGG - 24
Stem-loop(if miRNA)	---A            A    A       C C       C             A  A     AGUGAGGAGUGA AAGA GAUGGAU A UUCAUUC UCAAACCAAACAC CU U     |||||||||||| |||| ||||||| | ||||||| ||||||||||||| ||     UCACUCCUCACU UUCU CUACCUG U GAGUAAG AGUUUGGUUUGUG GG U UUUA            C    A       A C       U             -  A
Stem-loop sequence	AAGUGAGGAGUGAAAAGAAGAUGGAUCACUUCAUUCCUCAAACCAAACACACUAUUAGGGUGUUUGGUUUGAUGAAUGAGCUAGUCCAUCAUCUUCUCACUCCUCACUAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068835.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   ||||||||||*||||||||||||| targets:1155   CCAUCUUCUUCUCACUCCUCACUU   1178 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0086D12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138281.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   ||||||||||*||||||||||||| targets:1147   CCAUCUUCUUCUCACUCCUCACUU   1170 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100193120), mRNA	NA	coding protein	psRNATarget
BT035296.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   ||||||||||*||||||||||||| targets:1147   CCAUCUUCUUCUCACUCCUCACUU   1170 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0053K15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008668926.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   ||||||||||*||||||||||||| targets:1148   CCAUCUUCUUCUCACUCCUCACUU   1171 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100193120), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT088056.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   ||||||||||*||||||||||||| targets:1273   CCAUCUUCUUCUCACUCCUCACUU   1296 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0381E20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656331.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   ||||||||||*||||||||||||| targets:1822   CCAUCUUCUUCUCACUCCUCACUU   1845 Target Full Sequence	1.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100272998), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656330.2	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   ||||||||||*||||||||||||| targets:1793   CCAUCUUCUUCUCACUCCUCACUU   1816 Target Full Sequence	1.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100272998), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068564.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   |||||*||||*||||||||||||| targets:76   CCAUCGUCUUCUCACUCCUCACUU   99 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0327N20 mRNA, complete cds	NA	coding protein	psRNATarget
EU971252.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   ==|||*||||||||||||||=||| targets:399   UUAUCGUCUUUUCACUCCUCGCUU   422 Target Full Sequence	2.5	Zea mays clone 360410 mRNA sequence	NA	coding protein	psRNATarget
XM_020547325.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   |||||*||||*||||||||||||| targets:1055   CCAUCAUCUUCUCACUCCUCACUU   1078 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547324.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   |||||*||||*||||||||||||| targets:1056   CCAUCAUCUUCUCACUCCUCACUU   1079 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT024051.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   |||||||=*|*||||||||||||| targets:1972   CCAUCUUUCUCUCACUCCUCACUU   1995 Target Full Sequence	3.0	Zea mays clone EL01N0437F11 mRNA sequence	NA	coding protein	psRNATarget
XM_020546133.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   |=|||*||||*||||||||||||| targets:571   CUAUCAUCUUCUCACUCCUCACUU   594 Target Full Sequence	2.0	PREDICTED: Zea mays ubiquitin-activating enzyme E1 3 (LOC103634508), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001174998.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   =|||=*||||*||||||||||||| targets:869   UCAUUAUCUUCUCACUCCUCACUU   892 Target Full Sequence	2.0	Zea mays soluble epoxide hydrolase (pco095801), transcript variant 3, mRNA	NA	coding protein	psRNATarget
BT063621.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   =|||=*||||*||||||||||||| targets:869   UCAUUAUCUUCUCACUCCUCACUU   892 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0086K20 mRNA, complete cds	NA	coding protein	psRNATarget
AY105628.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   |=|||*||||*||||||||||||* targets:678   CUAUCAUCUUCUCACUCCUCACUA   701 Target Full Sequence	3.0	Zea mays PCO108049 mRNA sequence	NA	coding protein	psRNATarget
EU976791.1	ncRNA:24   GGUAGAAGAAAAGUGAGGAGUGAA   1   |=||-|||||*|||||=||||||| targets:855   CUAU-UUCUUCUCACUUCUCACUU   877 Target Full Sequence	2.5	Zea mays clone 990165 mRNA sequence	NA	coding protein	psRNATarget