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BaseInfo

ncRNA ID	novel_zma_miR1711
Species	Zea mays
Class	miRNA
Genome position	Chr4:68552729-68552818 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	1 - AUCCAGAGGGGGAUUGGAGGGGAU - 24
Stem-loop(if miRNA)	--                      A          U      CAA   AUCCAGAGGGGGAUUGGAGGGG UUAAAUCCCC CCUAGU   A   |||||||||||||||||||||| |||||||||| ||||||   UAGGUCUCCCCCUAACCUCCCC AAUUUAGGGG GGAUCA   A GU                      A          C      AUA
Stem-loop sequence	AUCCAGAGGGGGAUUGGAGGGGAUUAAAUCCCCUCCUAGUCAAAAAUAACUAGGCGGGGAUUUAAACCCCUCCAAUCCCCCUCUGGAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020540164.1	ncRNA:24   UAGGGGAGGUUAGGGGGAGACCUA   1   |*|||||||||||||||||||||| targets:1603   AACCCCUCCAAUCCCCCUCUGGAU   1626 Target Full Sequence	0.0	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ049235.1	ncRNA:23   AGGGGAGGUUAGGGGGAGACCUA   1   ||||||=||||||||=||||||| targets:1   UCCCCUUCAAUCCCCUUCUGGAU   23 Target Full Sequence	2.5	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:24   UAGGGGAGGUUAGGGGGAGACCUA   1   |*||||||||||||||*||||||| targets:83   AACCCCUCCAAUCCCCAUCUGGAU   106 Target Full Sequence	1.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
JB163489.1	ncRNA:24   UAGGGGAGGUUAGGGGGAGACCUA   1   |*||||||||||||||*||||||| targets:83   AACCCCUCCAAUCCCCAUCUGGAU   106 Target Full Sequence	1.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
HI403028.1	ncRNA:24   UAGGGGAGGUUAGGGGGAGACCUA   1   |*||||||||||||||*||||||| targets:83   AACCCCUCCAAUCCCCAUCUGGAU   106 Target Full Sequence	1.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:24   UAGGGGAGGUUAGGGGGAGACCUA   1   |*||=|||=|||||||=||||||| targets:4797   AACCUCUCUAAUCCCCUUCUGGAU   4820 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   UAGGGGAGGUUAGGGGGAGACCUA   1   |*||=|||=|||||||=||||||| targets:5024   AACCUCUCUAAUCCCCUUCUGGAU   5047 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957179.1	ncRNA:24   UAGGGGAGGUUAGGGGGAGACCUA   1   |**|*||||||||||||||||||| targets:1563   AGGCACUCCAAUCCCCCUCUGGAU   1586 Target Full Sequence	0.0	Zea mays clone 1584995 mRNA sequence	NA	coding protein	psRNATarget