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BaseInfo

ncRNA ID novel_zma_miR1706
Species Zea mays
Class miRNA
Genome position Chr4:15295188-15295293 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR1997865;SRR5451003;SRR2089700;SRR2089701;SRR2089704;SRR2089705
Length 21
Mature sequence(if miRNA) 1 - AGAAUCCUGAUGAUGCUGCAU - 21
Stem-loop(if miRNA) --                  A   -A      ACAAA       ---   CA    C
  GCGGCAUCAUCAGGAUUC CAC  AGGUAA     GUCGGAU   GCC  UGCA A
  |||||||||||||||||| |||  ||||||     |||||||   |||  ||||
  CGUCGUAGUAGUCCUAAG GUG  UUCGUU     UAGCUUG   UGG  AUGU U
UA                  A   CG      --GCC       GUC   --    A
Stem-loop sequence GCGGCAUCAUCAGGAUUCACACAAGGUAAACAAAGUCGGAUGCCCAUGCACAUAUGUAGGUCUGGUUCGAUCCGUUGCUUGCGUGAGAAUCCUGAUGAUGCUGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ098913.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:34   CUGCAGCAUCAUCAGGAUUCU   54

0.0 TSA: Zea mays contig34568, mRNA sequence NA coding protein psRNATarget
EU957755.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:399   CUGCAGCAUCAUCAGGAUUCU   419

0.0 Zea mays clone 1614286 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU951778.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:64   CUGCAGCAUCAUCAGGAUUCU   84

0.0 Zea mays clone 999960 mRNA sequence NA coding protein psRNATarget
KJ727838.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1190   CUGCAGCAUCAUCAGGAUUCU   1210

0.0 Zea mays clone pUT5791 AP2-EREBP transcription factor (EREB11) mRNA, partial cds NA coding protein psRNATarget
KJ726939.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1466   CUGCAGCAUCAUCAGGAUUCU   1486

0.0 Zea mays clone pUT3485 AP2-EREBP transcription factor (EREB121) mRNA, partial cds NA coding protein psRNATarget
FJ686697.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1449   CUGCAGCAUCAUCAGGAUUCU   1469

0.0 Zea mays sister of indeterminate spikelet 1 (sid1) mRNA, partial cds NA coding protein psRNATarget
EU974186.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1449   CUGCAGCAUCAUCAGGAUUCU   1469

0.0 Zea mays clone 442332 floral homeotic protein mRNA, complete cds NA coding protein psRNATarget
BT088249.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1424   CUGCAGCAUCAUCAGGAUUCU   1444

0.0 Zea mays full-length cDNA clone ZM_BFc0098F06 mRNA, complete cds NA coding protein psRNATarget
AY110208.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1527   CUGCAGCAUCAUCAGGAUUCU   1547

0.0 Zea mays CL1812_1 mRNA sequence NA coding protein psRNATarget
AF048900.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1527   CUGCAGCAUCAUCAGGAUUCU   1547

0.0 Zea mays indeterminate spikelet 1 (ids1) mRNA, complete cds NA coding protein psRNATarget
BT063357.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1497   CUGCAGCAUCAUCAGGAUUCU   1517

0.0 Zea mays full-length cDNA clone ZM_BFc0055O08 mRNA, complete cds NA coding protein psRNATarget
NM_001146067.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1497   CUGCAGCAUCAUCAGGAUUCU   1517

0.0 Zea mays sister of indeterminate spikelet 1 (sid1), mRNA NA coding protein psRNATarget
NM_001111434.2
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1534   CUGCAGCAUCAUCAGGAUUCU   1554

0.0 Zea mays indeterminate spikelet 1 (ids1), mRNA NA coding protein psRNATarget
XM_008649847.2
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1603   CUGCAGCAUCAUCAGGAUUCU   1623

0.0 PREDICTED: Zea mays indeterminate spikelet 1 (ids1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008652800.2
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1563   CUGCAGCAUCAUCAGGAUUCU   1583

0.0 PREDICTED: Zea mays sister of indeterminate spikelet 1 (sid1), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001328266.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1872   CUGCAGCAUCAUCAGGAUUCU   1892

0.0 Zea mays AP2-like ethylene-responsive transcription factor TOE3 (LOC103629196), mRNA NA coding protein psRNATarget
XM_020539160.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1960   CUGCAGCAUCAUCAGGAUUCU   1980

0.0 PREDICTED: Zea mays AP2-like ethylene-responsive transcription factor TOE3 (LOC103629196), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658315.2
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1859   CUGCAGCAUCAUCAGGAUUCU   1879

0.0 PREDICTED: Zea mays floral homeotic protein APETALA 2 (LOC103635944), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008650369.2
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:2004   CUGCAGCAUCAUCAGGAUUCU   2024

0.0 PREDICTED: Zea mays AP2-like ethylene-responsive transcription factor TOE3 (LOC103629196), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658314.2
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1891   CUGCAGCAUCAUCAGGAUUCU   1911

0.0 PREDICTED: Zea mays floral homeotic protein APETALA 2 (LOC103635944), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001254783.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||||||||*
targets:1512   CUGCAGCAUCAUCAGGAUUCC   1532

1.0 Zea mays glossy15 (gl15), transcript variant 2, mRNA NA coding protein psRNATarget
BT040346.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||||||||*
targets:1512   CUGCAGCAUCAUCAGGAUUCC   1532

1.0 Zea mays full-length cDNA clone ZM_BFc0084O08 mRNA, complete cds NA coding protein psRNATarget
EU957469.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||||||||*
targets:1596   CUGCAGCAUCAUCAGGAUUCC   1616

1.0 Zea mays clone 1593578 mRNA sequence NA coding protein psRNATarget
U41466.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||||||||*
targets:1652   CUGCAGCAUCAUCAGGAUUCC   1672

1.0 Zea mays Glossy15 mRNA, complete cds NA coding protein psRNATarget
XM_008660825.2
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||||||||*
targets:1761   CUGCAGCAUCAUCAGGAUUCC   1781

1.0 PREDICTED: Zea mays glossy15 (gl15), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008660824.2
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||||||||*
targets:1770   CUGCAGCAUCAUCAGGAUUCC   1790

1.0 PREDICTED: Zea mays glossy15 (gl15), transcript variant X1, mRNA NA coding protein psRNATarget
KJ727553.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:692   CUGCAGCAUCAUCACGAUUCC   712

2.5 Zea mays clone pUT5413 AP2-EREBP transcription factor (EREB212) mRNA, partial cds NA coding protein psRNATarget
BT062696.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:897   CUGCAGCAUCAUCACGAUUCC   917

2.5 Zea mays full-length cDNA clone ZM_BFb0334I17 mRNA, complete cds NA coding protein psRNATarget
NM_001174720.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:897   CUGCAGCAUCAUCACGAUUCC   917

2.5 Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB212), mRNA NA coding protein psRNATarget
EU947402.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:541   CUGCAGCAUCAUCACGAUUCC   561

2.5 Zea mays clone 342363 mRNA sequence NA coding protein psRNATarget
BT060890.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:900   CUGCAGCAUCAUCACGAUUCC   920

2.5 Zea mays full-length cDNA clone ZM_BFb0066G16 mRNA, complete cds NA coding protein psRNATarget
XM_020545131.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:1105   CUGCAGCAUCAUCACGAUUCC   1125

2.5 PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB212), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008663895.2
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:1440   CUGCAGCAUCAUCACGAUUCC   1460

2.5 PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB212), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001153337.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:1556   CUGCAGCAUCAUCACGAUUCC   1576

2.5 Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), mRNA NA coding protein psRNATarget
BT056188.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:1556   CUGCAGCAUCAUCACGAUUCC   1576

2.5 Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds NA coding protein psRNATarget
XM_008669654.2
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:1827   CUGCAGCAUCAUCACGAUUCC   1847

2.5 PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020547687.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:1945   CUGCAGCAUCAUCACGAUUCC   1965

2.5 PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547686.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:1948   CUGCAGCAUCAUCACGAUUCC   1968

2.5 PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547685.1
ncRNA:21   UACGUCGUAGUAGUCCUAAGA   1
  *|||||||||||||*|||||*
targets:1951   CUGCAGCAUCAUCACGAUUCC   1971

2.5 PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), transcript variant X1, mRNA NA coding protein psRNATarget
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