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BaseInfo

ncRNA ID	novel_zma_miR1701
Species	Zea mays
Class	miRNA
Genome position	Chr4:42703249-42703469 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715
Length	24
Mature sequence(if miRNA)	1 - UAGCAACCAACUGUAAGUCGUCGU - 24
Stem-loop(if miRNA)	--C     C                 ---    CCUU                       -----    CUU        CUAUAA  A         -U   -  - C        A    ACGAC UACAGUUGGUUGCUAAA   AUGG    CAGCGACCUACGGUUGGUCGCUA     ACAA   UUAGCGAC      GG UGGUCGCUG  AAG UG C GUCGCUAA G    ||||| |||||||||||||||||   ||||    |||||||||||||||||||||||     ||||   ||||||||      || |||||||||  ||| || | |||||||| G    UGCUG AUGUCAACCAACGAUUU   UAUC    GUUGUUGGGUGCCAACCAGCGAU     UGUU   AAUCGUUG      CC GCCAGCGAU  UUC AC G CAGCGAUU C UGC     A                 AGA    --AU                       UUAUA    -AU        --CCUG  A         UU   U  A C        U
Stem-loop sequence	CACGACCUACAGUUGGUUGCUAAAAUGGCCUUCAGCGACCUACGGUUGGUCGCUAACAACUUUUAGCGACCUAUAAGGAUGGUCGCUGUAAGUGCCGUCGCUAAAGGCUUUAGCGACCGACAUCUUUUUAGCGACCGACCGUCCGUUGCUAAUAUUGUAUAUUUAGCGACCAACCGUGGGUUGUUGUACUAUAGAUUUAGCAACCAACUGUAAGUCGUCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT083982.1	ncRNA:24   UGCUGCUGAAUGUCAACCAACGAU   1   ||*=||||*|||=||||||||||| targets:1075   ACAGCGACCUACGGUUGGUUGCUA   1098 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0061H19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177172.1	ncRNA:24   UGCUGCUGAAUGUCAACCAACGAU   1   ||*=||||*|||=||||||||||| targets:1075   ACAGCGACCUACGGUUGGUUGCUA   1098 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384696 (LOC100384696), mRNA	NA	coding protein	psRNATarget
XM_008681668.2	ncRNA:24   UG-CUGCUGAAUGUCAACCAACGAU   1   ||-||-||||*||||*||||||||| targets:3177   ACAGA-GACUGACAGAUGGUUGCUA   3200 Target Full Sequence	2.5	PREDICTED: Zea mays protein STRUBBELIG-RECEPTOR FAMILY 8 (LOC103654843), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008681666.2	ncRNA:24   UG-CUGCUGAAUGUCAACCAACGAU   1   ||-||-||||*||||*||||||||| targets:3591   ACAGA-GACUGACAGAUGGUUGCUA   3614 Target Full Sequence	2.5	PREDICTED: Zea mays protein STRUBBELIG-RECEPTOR FAMILY 8 (LOC103654843), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681667.2	ncRNA:24   UG-CUGCUGAAUGUCAACCAACGAU   1   ||-||-||||*||||*||||||||| targets:3896   ACAGA-GACUGACAGAUGGUUGCUA   3919 Target Full Sequence	2.5	PREDICTED: Zea mays protein STRUBBELIG-RECEPTOR FAMILY 8 (LOC103654843), transcript variant X3, mRNA	NA	coding protein	psRNATarget