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BaseInfo

ncRNA ID	novel_zma_miR1696
Species	Zea mays
Class	miRNA
Genome position	Chr3:27213489-27213623 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647387
Length	24
Mature sequence(if miRNA)	112 - ACCGUCCGCCCCUGUGCAGAGGGU - 135
Stem-loop(if miRNA)	---UC      C   UC      C     ACCC   ----    CA   C       -    ACCA   A   U      CUGCAC AGG  GCGGAC GUCCG    UGU    GCCG  GAC GUCCGCG UCUG    GAG GCG C      |||||| |||  |||||| |||||    |||    ||||  ||| ||||||| ||||    ||| |||      GACGUG UCC  CGCCUG CAGGC    GCG    CGGC  CUG CAGGCGC GGAC    CUC CGC G UGGGA      -   -C      C     --GC   UCCC    --   C       C    CACG   -   C
Stem-loop sequence	UCCUGCACCAGGUCGCGGACCGUCCGACCCUGUGCCGCAGACCGUCCGCGUCUGACCAGAGAGCGUCGCCGCCUCGCACCAGGCCGCGGACCGUCCGGCCCCUGCGCGCGGACCGUCCGCCCCUGUGCAGAGGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970066.1	ncRNA:24   UGGGAGACGUGUCCCCGCCUGCCA   1   =||||||||||||||||||||||| targets:821   GCCCUCUGCACAGGGGCGGACGGU   844 Target Full Sequence	0.0	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
XM_020547963.1	ncRNA:24   UGGGAGACGUGUCCCCGCCUGCCA   1   =|=|||||||||||||=||||||* targets:1036   GCUCUCUGCACAGGGGUGGACGGC   1059 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100501411), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001196134.1	ncRNA:24   UGGGAGACGUGUCCCCGCCUGCCA   1   =|=|||||||||||||=||||||* targets:1461   GCUCUCUGCACAGGGGUGGACGGC   1484 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100501411), mRNA	NA	coding protein	psRNATarget
BT085255.1	ncRNA:24   UGGGAGACGUGUCCCCGCCUGCCA   1   =|=|||||||||||||=||||||* targets:1461   GCUCUCUGCACAGGGGUGGACGGC   1484 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0345D14 mRNA, complete cds	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   UGGGAGACGUGUCCCCGCCUGCCA   1   ==||*|*||||||||*|||||||| targets:708   GUCCGCGGCACAGGGCCGGACGGU   731 Target Full Sequence	2.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
EU957504.1	ncRNA:24   UGGGAGACGUGUCCCCGCCUGCCA   1   =|=|*|||||*|||*||||||||| targets:1855   GCUCGCUGCAGAGGCGCGGACGGU   1878 Target Full Sequence	2.5	Zea mays clone 1595644 transferase mRNA, complete cds	NA	coding protein	psRNATarget