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BaseInfo

ncRNA ID novel_zma_miR1693
Species Zea mays
Class miRNA
Genome position Chr4:105346146-105346264 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089713;SRR2089714;SRR2089700;SRR2089703
Length 24
Mature sequence(if miRNA) 1 - AAUAGAAUAAAAUGAUGGGACUAA - 24
Stem-loop(if miRNA) --      UA          C       UUGCA            A         AAAC
  AGUCCC  CAUUUUAUUC AUUUUAG     AAAUUGCUAAAU UAGAAACUA    U
  ||||||  |||||||||| |||||||     |||||||||||| |||||||||    C
  UCAGGG  GUAAAAUAAG UAAAAUC     UUUAACGGUUUA AUCUUUGAU    U
AA      UA          A       UGAUA            A         CUUA
Stem-loop sequence AGUCCCUACAUUUUAUUCCAUUUUAGUUGCAAAAUUGCUAAAUAUAGAAACUAAAACUCUAUUCUAGUUUCUAAAUUUGGCAAUUUAUAGUCUAAAAUAGAAUAAAAUGAUGGGACUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020547858.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||||||||||||||||||
targets:1566   UUAGUCCCAUCAUUUUAUUCUAUU   1589

0.0 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
HI403040.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||||||||||||||||||
targets:29   UUAGUCCCAUCAUUUUAUUCUAUU   52

0.0 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
LQ235170.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||||||||||||||||||
targets:29   UUAGUCCCAUCAUUUUAUUCUAUU   52

0.0 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
JB163501.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||||||||||||||||||
targets:29   UUAGUCCCAUCAUUUUAUUCUAUU   52

0.0 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
XM_008654984.2
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||||||||||||||*|||
targets:2931   UUAGUCCCAUCAUUUUAUUCCAUU   2954

1.5 PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||||||
targets:1666   UUAGUCCCUUCAUUUUAUUCUAUU   1689

1.0 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||**||||||||||||||
targets:1569   UUAGUCCCUACAUUUUAUUCUAUU   1592

2.0 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
BT019141.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||||||||||||||*|||
targets:168   UUAGUCCCAUCAUUUUAUUCCAUU   191

1.5 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||||||
targets:836   UUAGUCCCUUCAUUUUAUUCUAUU   859

1.0 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
JB167174.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||||||||||||||*|||
targets:43   UUAGUCCCAUCAUUUUAUUCCAUU   66

1.5 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||||||||||||||*|||
targets:43   UUAGUCCCAUCAUUUUAUUCCAUU   66

1.5 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
HI406713.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||||||||||||||*|||
targets:43   UUAGUCCCAUCAUUUUAUUCCAUU   66

1.5 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
HI403055.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50

1.0 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
JB163516.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50

1.0 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
LQ235185.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50

1.0 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
HI403050.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50

1.0 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
LQ235180.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50

1.0 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
JB163511.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50

1.0 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
NM_001153051.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*||||||||||=||||
targets:812   UUAGUCCCUUCAUUUUAUUUUAUU   835

2.5 Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA NA coding protein psRNATarget
BT055601.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*||||||||||=||||
targets:812   UUAGUCCCUUCAUUUUAUUUUAUU   835

2.5 Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds NA coding protein psRNATarget
XM_020550478.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||*|||
targets:2648   UUAGUCCCUUCAUUUUAUUCCAUU   2671

2.5 PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||*|||
targets:2097   UUAGUCCCUUCAUUUUAUUCCAUU   2120

2.5 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||*|||
targets:2097   UUAGUCCCUUCAUUUUAUUCCAUU   2120

2.5 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
XM_020543841.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*||||||||||||*||
targets:945   UUAGUCCCUUCAUUUUAUUCUUUU   968

2.5 PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA NA coding protein psRNATarget
EZ060524.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||**||||||||||||||
targets:69   UUAGUCCCUACAUUUUAUUCUAUU   92

2.0 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
JB163513.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||*|||
targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50

2.5 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
HI403052.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||*|||
targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50

2.5 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
LQ235182.1
ncRNA:24   AAUCAGGGUAGUAAAAUAAGAUAA   1
  ||||||||*|||||||||||*|||
targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50

2.5 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
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