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BaseInfo

ncRNA ID	novel_zma_miR1691
Species	Zea mays
Class	miRNA
Genome position	Chr4:149278836-149278901 [-]
Reference genome	RefGen_v4
Source	SRR2089711
Length	21
Mature sequence(if miRNA)	46 - AGAGGAUUGGAGGGGAUUAAG - 66
Stem-loop(if miRNA)	--A                 A     A    AA    GAGGAUUGGAGGGGAUU AGGGG AAGU  A    ||||||||||||||||| ||||| ||||    CUCCUAGCCUCCCCUAA UCCCC UUUA  U ACC                 C     C    AU
Stem-loop sequence	AGAGGAUUGGAGGGGAUUAAGGGGAAAGUAAAUUAAUUUCCCCCUCAAUCCCCUCCGAUCCUCCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ098881.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   ||||||||||||||||||||| targets:82   CUUAAUCCCCUCCAAUCCUCU   102 Target Full Sequence	0.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
JB170124.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   |||||||||||=||||||||* targets:72   CUUAAUCCCCUUCAAUCCUCC   92 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   |||||||||||=||||||||* targets:72   CUUAAUCCCCUUCAAUCCUCC   92 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   |||||||||||=||||||||* targets:72   CUUAAUCCCCUUCAAUCCUCC   92 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EU961132.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   |||||||||||=||||||||* targets:826   CUUAAUCCCCUUCAAUCCUCC   846 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   |||||||||||=||||||||* targets:865   CUUAAUCCCCUUCAAUCCUCC   885 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   |||||||||||=||||||||* targets:870   CUUAAUCCCCUUCAAUCCUCC   890 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   |||||||||||=||||||||* targets:870   CUUAAUCCCCUUCAAUCCUCC   890 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU964952.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   *||||||=||||||||||||* targets:16   AUUAAUCUCCUCCAAUCCUCC   36 Target Full Sequence	2.0	Zea mays clone 282757 proteasome subunit alpha type 7 mRNA, complete cds	NA	coding protein	psRNATarget
JB163954.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   ||*|||||||||||||||||* targets:37   CUCAAUCCCCUCCAAUCCUCC   57 Target Full Sequence	2.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   ||*|||||||||||||||||* targets:37   CUCAAUCCCCUCCAAUCCUCC   57 Target Full Sequence	2.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   ||*|||||||||||||||||* targets:37   CUCAAUCCCCUCCAAUCCUCC   57 Target Full Sequence	2.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   ||*|||||||||||||||||* targets:80   CUCAAUCCCCUCCAAUCCUCC   100 Target Full Sequence	2.0	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   ||*|||||||||||||||||* targets:46   CUCAAUCCCCUCCAAUCCUCC   66 Target Full Sequence	2.0	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
BT088155.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   ||*|||||||||||||||||* targets:1468   CUCAAUCCCCUCCAAUCCUCC   1488 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
HI405944.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||||||=||||||||||*|| targets:86   UUUAAUCUCCUCCAAUCCCCU   106 Target Full Sequence	2.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||||||=||||||||||*|| targets:86   UUUAAUCUCCUCCAAUCCCCU   106 Target Full Sequence	2.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
JB166405.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||||||=||||||||||*|| targets:86   UUUAAUCUCCUCCAAUCCCCU   106 Target Full Sequence	2.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||||||=||||||||||*|| targets:86   UUUAAUCUCCUCCAAUCCCCU   106 Target Full Sequence	2.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
JB166408.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||||||=||||||||||*|| targets:86   UUUAAUCUCCUCCAAUCCCCU   106 Target Full Sequence	2.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
HI405947.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||||||=||||||||||*|| targets:86   UUUAAUCUCCUCCAAUCCCCU   106 Target Full Sequence	2.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
EU942133.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||||||=||||||||*|||| targets:188   UUUAAUCUCCUCCAAUACUCU   208 Target Full Sequence	2.5	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   *||||||=||||||||*|||| targets:178   AUUAAUCUCCUCCAAUACUCU   198 Target Full Sequence	2.5	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =|||||||||||||||||*|* targets:3268   UUUAAUCCCCUCCAAUCCCCC   3288 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =|||||||||||||||||*|* targets:1589   UUUAAUCCCCUCCAAUCCCCC   1609 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =|||||||||||||||||*|* targets:1589   UUUAAUCCCCUCCAAUCCCCC   1609 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||*||||||||||||||*|| targets:681   UUUUAUCCCCUCCAAUCCCCU   701 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
BT017268.1	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||*||||||||||||||*|| targets:908   UUUCAUCCCCUCCAAUCCCCU   928 Target Full Sequence	2.5	Zea mays clone EL01N0312A05.c mRNA sequence	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||*||||||||||||||*|| targets:1561   UUUUAUCCCCUCCAAUCCCCU   1581 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||*||||||||||||||*|| targets:1581   UUUUAUCCCCUCCAAUCCCCU   1601 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||*||||||||||||||*|| targets:1605   UUUUAUCCCCUCCAAUCCCCU   1625 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   GAAUUAGGGGAGGUUAGGAGA   1   =||*||||||||||||||*|| targets:1638   UUUUAUCCCCUCCAAUCCCCU   1658 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget