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BaseInfo

ncRNA ID novel_zma_miR1690
Species Zea mays
Class miRNA
Genome position Chr4:154628594-154628683 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089715;SRR5451005;SRR2089704
Length 24
Mature sequence(if miRNA) 1 - UCAACACAUGUGGAUUGGGGUCAA - 24
Stem-loop(if miRNA) --                 A    G  A       UAUAACUUAA
  GAUCCCAAUCCACAUGU UUGA GU GAUUGGG          A
  ||||||||||||||||| |||| || |||||||
  CUGGGGUUAGGUGUACA AACU CA CUAACCC          C
AA                 C    A  C       CACAUUUAAC
Stem-loop sequence GAUCCCAAUCCACAUGUAUUGAGGUAGAUUGGGUAUAACUUAAACCAAUUUACACCCCAAUCCACAUCAACACAUGUGGAUUGGGGUCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163536.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:7   UUGACCUCAAUCCACAUGUGUUGA   30

1.0 Sequence 1200 from Patent EP2559767 NA coding protein psRNATarget
HI403075.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:7   UUGACCUCAAUCCACAUGUGUUGA   30

1.0 Sequence 1200 from Patent EP2074227 NA coding protein psRNATarget
LQ235205.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:7   UUGACCUCAAUCCACAUGUGUUGA   30

1.0 Sequence 1200 from Patent EP2985353 NA coding protein psRNATarget
LQ235506.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1501 from Patent EP2985353 NA coding protein psRNATarget
HI403262.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1387 from Patent EP2074227 NA coding protein psRNATarget
JB163782.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1446 from Patent EP2559767 NA coding protein psRNATarget
JB163781.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1445 from Patent EP2559767 NA coding protein psRNATarget
HI403229.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1354 from Patent EP2074227 NA coding protein psRNATarget
LQ235393.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1388 from Patent EP2985353 NA coding protein psRNATarget
HI403376.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1501 from Patent EP2074227 NA coding protein psRNATarget
JB163724.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1388 from Patent EP2559767 NA coding protein psRNATarget
HI403321.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1446 from Patent EP2074227 NA coding protein psRNATarget
JB163837.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1501 from Patent EP2559767 NA coding protein psRNATarget
HI403319.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1444 from Patent EP2074227 NA coding protein psRNATarget
JB163780.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1444 from Patent EP2559767 NA coding protein psRNATarget
HI403320.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1445 from Patent EP2074227 NA coding protein psRNATarget
LQ235392.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1387 from Patent EP2985353 NA coding protein psRNATarget
LQ235451.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1446 from Patent EP2985353 NA coding protein psRNATarget
HI403263.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1388 from Patent EP2074227 NA coding protein psRNATarget
LQ235449.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1444 from Patent EP2985353 NA coding protein psRNATarget
LQ235359.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1354 from Patent EP2985353 NA coding protein psRNATarget
JB163723.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1387 from Patent EP2559767 NA coding protein psRNATarget
LQ235450.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1445 from Patent EP2985353 NA coding protein psRNATarget
JB163690.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:8   UUGACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1354 from Patent EP2559767 NA coding protein psRNATarget
XM_020543504.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:1816   UUGACCUCAAUCCACAUGUGUUGA   1839

1.0 PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020543503.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||||||||||||||
targets:1817   UUGACCUCAAUCCACAUGUGUUGA   1840

1.0 PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA NA coding protein psRNATarget
HI406945.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  |||||=|||||||||=||||||||
targets:5   UUGACUCCAAUCCACGUGUGUUGA   28

2.5 Sequence 5070 from Patent EP2074227 NA coding protein psRNATarget
LQ239075.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  |||||=|||||||||=||||||||
targets:5   UUGACUCCAAUCCACGUGUGUUGA   28

2.5 Sequence 5070 from Patent EP2985353 NA coding protein psRNATarget
JB167406.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  |||||=|||||||||=||||||||
targets:5   UUGACUCCAAUCCACGUGUGUUGA   28

2.5 Sequence 5070 from Patent EP2559767 NA coding protein psRNATarget
HI403486.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  |||||||=|||||||||||*||||
targets:4   UUGACCCUAAUCCACAUGUAUUGA   27

2.5 Sequence 1611 from Patent EP2074227 NA coding protein psRNATarget
JB163947.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  |||||||=|||||||||||*||||
targets:4   UUGACCCUAAUCCACAUGUAUUGA   27

2.5 Sequence 1611 from Patent EP2559767 NA coding protein psRNATarget
LQ235616.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  |||||||=|||||||||||*||||
targets:4   UUGACCCUAAUCCACAUGUAUUGA   27

2.5 Sequence 1611 from Patent EP2985353 NA coding protein psRNATarget
HI402950.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=||||||||||||*||||
targets:7   UUGACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=||||||||||||*||||
targets:7   UUGACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
JB163411.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=||||||||||||*||||
targets:7   UUGACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
HI403017.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=||||||||||||*||||
targets:7   UUGACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1142 from Patent EP2074227 NA coding protein psRNATarget
LQ235147.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=||||||||||||*||||
targets:7   UUGACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1142 from Patent EP2985353 NA coding protein psRNATarget
JB163478.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=||||||||||||*||||
targets:7   UUGACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1142 from Patent EP2559767 NA coding protein psRNATarget
LQ235491.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|||=|||||||||||||||||
targets:8   UUAACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1486 from Patent EP2985353 NA coding protein psRNATarget
JB163822.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|||=|||||||||||||||||
targets:8   UUAACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1486 from Patent EP2559767 NA coding protein psRNATarget
HI403361.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|||=|||||||||||||||||
targets:8   UUAACCUCAAUCCACAUGUGUUGA   31

1.0 Sequence 1486 from Patent EP2074227 NA coding protein psRNATarget
XM_008659899.2
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||||*|||||||||||
targets:2068   UUGACCUCAAUCAACAUGUGUUGA   2091

2.5 PREDICTED: Zea mays carotene epsilon-monooxygenase, chloroplastic (LOC103637620), mRNA NA coding protein psRNATarget
XM_008650840.2
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||||=|||*|||||||||||||
targets:3370   UUGACCUCAACCCACAUGUGUUGA   3393

2.0 PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA NA coding protein psRNATarget
XM_008650840.2
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||=|*|||*|||||||||||||
targets:3488   UUGAUCGCAACCCACAUGUGUUGA   3511

2.0 PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA NA coding protein psRNATarget
JB167413.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|=|=|||||||||||||||||
targets:7   UUCAUCUCAAUCCACAUGUGUUGA   30

1.0 Sequence 5077 from Patent EP2559767 NA coding protein psRNATarget
LQ239082.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|=|=|||||||||||||||||
targets:7   UUCAUCUCAAUCCACAUGUGUUGA   30

1.0 Sequence 5077 from Patent EP2985353 NA coding protein psRNATarget
HI406952.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|=|=|||||||||||||||||
targets:7   UUCAUCUCAAUCCACAUGUGUUGA   30

1.0 Sequence 5077 from Patent EP2074227 NA coding protein psRNATarget
BT085393.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||||=|=|||||||||||*|||||
targets:1561   UUGAUCUCAAUCCACAUGAGUUGA   1584

2.5 Zea mays full-length cDNA clone ZM_BFc0006K23 mRNA, complete cds NA coding protein psRNATarget
JB163457.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|||=||||||||||||*||||
targets:7   UUCACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1121 from Patent EP2559767 NA coding protein psRNATarget
LQ235126.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|||=||||||||||||*||||
targets:7   UUCACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1121 from Patent EP2985353 NA coding protein psRNATarget
HI402996.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|||=||||||||||||*||||
targets:7   UUCACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1121 from Patent EP2074227 NA coding protein psRNATarget
HI403051.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  |*||=||||||||||||||*||||
targets:7   UAGAUCCCAAUCCACAUGUAUUGA   30

1.5 Sequence 1176 from Patent EP2074227 NA coding protein psRNATarget
LQ235181.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  |*||=||||||||||||||*||||
targets:7   UAGAUCCCAAUCCACAUGUAUUGA   30

1.5 Sequence 1176 from Patent EP2985353 NA coding protein psRNATarget
JB163512.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  |*||=||||||||||||||*||||
targets:7   UAGAUCCCAAUCCACAUGUAUUGA   30

1.5 Sequence 1176 from Patent EP2559767 NA coding protein psRNATarget
JB163398.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  |*||||=||||||||||||*||||
targets:7   UAGACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1062 from Patent EP2559767 NA coding protein psRNATarget
HI403066.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*||||=|||||||||||*||||
targets:7   UUCACCCUAAUCCACAUGUAUUGA   30

2.5 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
HI402937.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  |*||||=||||||||||||*||||
targets:7   UAGACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1062 from Patent EP2074227 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*||||=|||||||||||*||||
targets:7   UUCACCCUAAUCCACAUGUAUUGA   30

2.5 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
JB163527.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*||||=|||||||||||*||||
targets:7   UUCACCCUAAUCCACAUGUAUUGA   30

2.5 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
LQ235067.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  |*||||=||||||||||||*||||
targets:7   UAGACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1062 from Patent EP2985353 NA coding protein psRNATarget
HI403056.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|||*||||||||=||||||||
targets:8   UUCACCGCAAUCCACGUGUGUUGA   31

2.5 Sequence 1181 from Patent EP2074227 NA coding protein psRNATarget
LQ235186.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|||*||||||||=||||||||
targets:8   UUCACCGCAAUCCACGUGUGUUGA   31

2.5 Sequence 1181 from Patent EP2985353 NA coding protein psRNATarget
JB163517.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|||*||||||||=||||||||
targets:8   UUCACCGCAAUCCACGUGUGUUGA   31

2.5 Sequence 1181 from Patent EP2559767 NA coding protein psRNATarget
JB163470.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|||=||||||||||||*||||
targets:7   UUCACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1134 from Patent EP2559767 NA coding protein psRNATarget
HI403009.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|||=||||||||||||*||||
targets:7   UUCACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1134 from Patent EP2074227 NA coding protein psRNATarget
LQ235139.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||*|||=||||||||||||*||||
targets:7   UUCACCUCAAUCCACAUGUAUUGA   30

2.5 Sequence 1134 from Patent EP2985353 NA coding protein psRNATarget
LQ239297.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||**|||=|||=||||||||||||
targets:11   UUCCCCCUAAUUCACAUGUGUUGA   34

2.5 Sequence 5292 from Patent EP2985353 NA coding protein psRNATarget
HI407167.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||**|||=|||=||||||||||||
targets:11   UUCCCCCUAAUUCACAUGUGUUGA   34

2.5 Sequence 5292 from Patent EP2074227 NA coding protein psRNATarget
JB167628.1
ncRNA:24   AACUGGGGUUAGGUGUACACAACU   1
  ||**|||=|||=||||||||||||
targets:11   UUCCCCCUAAUUCACAUGUGUUGA   34

2.5 Sequence 5292 from Patent EP2559767 NA coding protein psRNATarget
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